Solanum dulcamara (climbing nightshade): 129882258
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Entry
129882258 CDS
T09577
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129882258
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
129882258
Transfer RNA biogenesis [BR:
sdul03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
129882258
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Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
129882258
NCBI-ProteinID:
XP_055812440
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Position
3:complement(4843778..4855782)
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AA seq
793 aa
AA seq
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MAVRAMSSCVIFRSPATPPLVVSRRCCCLRQLTASSRHRNRSNTHSFLRCAPYPHSHVTV
RIYSVNNLVEMFMEELASIHKRGRVRATSKLELLSTGELLEDKLKKGTLQKGLLLEFKKD
SERLLLAVALKPDGKKNWMVSDQNGITTSIKPQQVTFIVPGAENFEPTEISEFVQKAHDN
LDPALLEFAWNELLEKNKSVTVQELAEMIFGSAEPLETYCAHLLLSRDEVYFAVLESKGL
SVYGPRTANQVDELLRRKLAKETAEKEFEELIQFLRSAKQMPPQDKIPRFSWKAEEKTWY
KIESLEAFAIDSCKNDDQKKTAGMILKAMGLAKTSSSAVNLLIDIGYFPVHVNLDLLKLN
LPTDHRDEILSATESLLSASTDLDEADRIDLTHLKVYAIDVDEADELDDALSATRLQDGR
IKIWIHIADPTSLVQPGSIIDKDARRRGTSIFLPTATYPMFPERLAMEGMSLQQGKLCNA
VSVSVVLRSDGSIAEYSVENSIIKPTYMLTYESATELLHLNLEEEIELKILSEAAALRLR
WRQEQGAIDTATLETRIKVTNPDHPEPSIKLYVENQADAAMRLVSEMMILCGEVIATFGS
HNNIPLPYRGQPQSNIDTSAFAHLPEGPVRSAAIVRTMRAAEMDFRNPIRHGVLGLPGYV
QFTSPIRRYMDLAAHYQVKAFLRGDSPPLSAGELEGIASTVNMTTRVVRKLSSSSLRYWI
LEYLRRQPKGKRFRALVLRFIKDRIAAILLTEIGVQASSWVSIGVQIGGEVDVQVEEAHP
RDDILSLKEVEVV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcgcgccatgagcagctgcgtaattttccgttcccccgcaacgccgccgctc
gtagtctcccgccgatgctgctgtctccgtcaattaacagcctcttctcgacatagaaac
cgttcgaatacacattcatttctccgttgtgcgccttatccgcacagccatgtcaccgtt
cggatttattcagttaataacctcgtcgaaatgttcatggaagagcttgcttctatacac
aaacgtggcagagttcgtgctactagcaagctggaattattaagcacaggagagctgctt
gaggacaagttgaagaagggaacactacaaaagggattattgctggagttcaagaaggat
tctgaaaggttgttgctagcagttgctcttaaacccgacggaaaaaagaattggatggtt
tctgatcagaatgggattacaacctccattaagccacagcaagtgacttttattgttcct
ggtgctgaaaactttgagcccacagaaatatcagaatttgtacagaaagctcatgataac
ttggatccagcactgcttgaatttgcatggaatgagcttctcgagaaaaataaatcagta
acagttcaagaactagctgagatgatttttggtagtgcggagcctcttgagacctattgc
gcccaccttctgttatcaagagatgaggtgtactttgcagttctggagtcaaaaggtctc
tctgtatatggacctcggactgctaatcaggtggatgaacttttgcgaaggaagcttgct
aaagagactgcagagaaggagtttgaggaacttatacagttcctgcgatctgctaaacaa
atgcctcctcaagacaaaatcccaagattttcctggaaggctgaagagaaaacttggtac
aagatagagtctcttgaagcttttgccattgattcttgcaaaaacgatgatcaaaagaaa
acagctgggatgattttgaaggccatgggactggcgaagacttcatcttcagcagtgaac
ctcctcatagatattgggtattttcctgtacatgtaaatcttgatttgttaaagttgaac
ctccctactgatcatcgagatgagattctgtcggccacagagagtcttttgtctgcatcg
actgatcttgatgaggctgatagaatagacctgactcacctgaaggtttacgcgattgat
gttgatgaggctgatgagcttgatgacgcattgagtgcaacaaggttgcaggacggccgg
attaaaatttggatacatattgcagatcctactagtttagttcagccaggaagcataata
gacaaggatgcaagaagaagaggaacttcaatattcttgcctactgcaacatatccaatg
tttcctgaaaggttggccatggaaggcatgagtctgcagcaaggaaagctgtgtaatgct
gtttctgtgtctgttgtgctgcgttctgatggcagcattgcagaatactcggtggaaaac
tcaatcatcaaaccgacatatatgttgacatatgagagtgcaacggagctccttcatttg
aatcttgaagaagagattgagctgaaaattctttctgaagcagctgcactccggttaaga
tggcgtcaagaacagggtgctatagacacagccaccttagaaacgcgaatcaaggtgact
aatccggatcatccagagccgtcaatcaagctatatgttgaaaaccaagctgatgcagct
atgaggcttgtttctgagatgatgatactctgtggggaagttatagccacttttggttct
cataacaacatccctttaccataccgaggacagcctcaatctaatattgacacttctgca
tttgcacaccttccagaaggacccgttaggagtgctgctattgttcgaactatgcgtgca
gctgaaatggatttcaggaatcctatacgccatggggtgttgggacttccaggctatgtt
cagtttacctcccctattcgaagatatatggatctcgcagcccattatcaggtaaaagcc
tttcttcgtggtgattctcctcctctctcagctggggagctggaaggcattgcatctaca
gtaaacatgacaacgagagttgtaaggaaactctccagcagcagtcttcgttattggata
ttggaatacttgagaaggcaaccgaaagggaaacgttttcgtgccctggtccttagattc
atcaaagaccgaatagccgcgatactgttgacagagattggagttcaagcttcttcgtgg
gtgtctattggtgtacaaattggtggtgaagtagatgtgcaagttgaagaagctcatcca
cgtgatgatattctctcccttaaggaggttgaggtggtatag
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