Solanum dulcamara (climbing nightshade): 129882392
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Entry
129882392 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129882392 isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129882392
Membrane trafficking [BR:
sdul04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
129882392
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
129882392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
ANAPC4_WD40
WD40
Synaptobrevin
WDR55
Lgl_C
TFIIIC_delta
Beta-prop_HPS5
Beta-prop_RIG_2nd
PEP5_VPS11_N
Beta-prop_IFT140_1st
NBCH_WD40
KNTC1_N
ABC_tran_Xtn
Motif
Other DBs
NCBI-GeneID:
129882392
NCBI-ProteinID:
XP_055812638
LinkDB
All DBs
Position
3:10349684..10369266
Genome browser
AA seq
1109 aa
AA seq
DB search
MFAKKLFQKATQYHHHHQTNGSGLTASDLNVRATVHYGIPSTSSILAVDSVQRLLAIGTL
DGRIKVIGGDNIEGLLISPKQLPYKYLEFLQNQGFLVSITNENDIQVWNLKSRSVACDLQ
WESNITAFSVINGSSFMYVGDEYGTISVLKFCVESRELLQLPYQILWSSLSEAAGFPYSD
HQPVVGILPQPFTSGNRLLIAYECGLIILWDVIEAHVIIVKGDKDLHLKDGALNFKQNAD
SSSPDDLLQHQFEEKEITTLCWASTDGSILAAGYIDGDILLWKTSKSTASKGQEAGPFDN
VVKLQLSSVEKRLPIIVLHWWANSKSRNNSDGHLLIYGGDEIGSDEVITILTLEWSSGME
TLKCVGRVDLTLSGSFADTILLPTTGTTATDEKAALFVLMSPGQLNLFDCSTLSDLVSKE
EKKISLSAKDFPLELPTVDPSMTVTKLTQLHSDGNLTETPFFKKFSAATSSGASRWPLTG
GVYNHTSQAETNRIQRVFIAGYQDGSVRMWDATHPVFLLLCLLDREVKCVNTVISSASVS
KIDFCFQTLRLAVGDASGLVRLYDFKHSDMGNLHVVTDTKSEVHELAQGQGPTCRAVLKL
LDVRVRAIEFVNHGAKLAVGYENAKVAVLDVTSLSVLFLSDSASVGISPLVTLIAKSFVH
SDRTSKSPKQSELPENRMEELMFILTEDAKIYVIDGGNGKIYGSGPLHLKKVSTAISMYV
IENNTPVSDIISKQPESSKDDAASNEPSQEMTSRDLSDTVPFLENDPSRKHFEESFILLC
CKDSIRTYATKSVVHGDNKSVCKVKLDEPCCWTTTFMKDGKACALLLLFQTGDIEIRSLP
DLELVERTSLMSVLRWNFKPNMDRAISSMENGHITLANGSELAFMSLLASENDFRIPESL
PSLHDEVLAAAADAAMKFSTQKKKQTSLQGGGPNILGTLVKGFKAGKTNHNMDLSQMSKS
NFSHLEGVFMKNALHPEPSPTKEGLEEVELDIDDIEIDEPVPVVSTSSHSTQNSKRGTER
EKLLDSEGDDAKPRLRTREEIIAKYRKTGAQDASSAAGQARDKLLERQEKLERISQRTEE
LRNGAEDFASLANELVKVMENRNRKWWQI
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcgaagaagcttttccagaaagccacacaatatcatcatcatcatcagacaaat
ggcagtggtttgacagcaagtgacttgaatgttcgtgctactgtacattatggtatccct
tcaacatcatcaattcttgcagtagactccgtccagcgcctattggccattggaacattg
gatggtaggataaaagtgattggtggggacaatattgaaggtctcttgatttctccaaag
cagttgccatacaaatatttagagttccttcaaaaccagggttttcttgtcagcatcaca
aatgaaaatgatatccaggtttggaatctcaaaagcagatctgtagcttgcgatttgcaa
tgggaatcaaatataactgccttttcagttatcaatggctcttccttcatgtatgttgga
gatgaatatggaacaatttcagttttgaagttctgtgttgagagcagagagctactgcaa
ttgccatatcagatcttatggagttctctttctgaagcagctggttttccatattcagat
catcaaccagttgttggaattctcccgcaaccttttacttcgggaaatagattattgatt
gcatatgagtgtggtttaattatactttgggatgtcatcgaagcccatgttatcattgtc
aaaggtgataaagatctacatttgaaggatggtgctttaaactttaaacagaatgcagat
tccagctctcctgatgatctattgcagcaccaatttgaggagaaagagataaccacactt
tgctgggcatctactgatggatccattcttgctgctgggtacatagatggagatattctc
ctttggaaaacatcaaaatcgaccgcaagcaaaggtcaggaagctggaccatttgataat
gttgttaagctacagctgtcttctgttgaaaagaggcttccaattattgtcttacactgg
tgggcaaacagtaaatcccggaataatagcgatggccatctcctcatttatggtggtgat
gaaataggatccgatgaagtcattactatccttactcttgagtggtcatctggaatggag
actttgaaatgtgttggtcgtgttgacctcactcttagtggctcatttgcagatacaatc
ttattaccaactactgggacaacagcaactgatgagaaagctgctttatttgtgttgatg
agccctggacaactaaacctgtttgattgctcgaccttgtctgacttggtatccaaagaa
gagaaaaaaatatctctatcagctaaggattttcctctagaattgccaactgttgatcct
tccatgacagtgacaaagcttacccagttgcattcagatggaaacttaacagagacacct
ttcttcaagaagttctccgcagcaacatcatctggggctagcagatggcccttgactgga
ggggtatataatcatacttctcaagctgagactaacaggatccagagagtttttatagca
ggttatcaggatggatctgtaaggatgtgggatgccactcatccggtcttccttctcctt
tgtctcttggatagagaggttaaatgtgtaaatacagttatatcaagtgcttcagtttca
aaaatagatttctgcttccagacattaagattggcagttggggatgcaagtggtctggtg
cgtctttatgatttcaaacatagtgatatgggaaacctccacgttgttactgatactaaa
agtgaagttcatgagttggcacaaggtcaaggacctacttgcagagctgttctaaagctg
ctcgatgttcgagtccgagcaattgaatttgtaaatcatggagccaaacttgcagttgga
tacgaaaatgctaaggttgcagtgcttgatgtgacttcattatcagtattgttcttatca
gactctgcatctgttggtatctctccactggtgactctgattgccaaaagttttgtgcat
agtgaccgtactagcaaaagcccaaaacaatcagagcttccagaaaaccgtatggaggaa
ctcatgttcattttaactgaggatgcgaagatctatgtaattgatggtggtaatggtaaa
atctatggttcagggcccttgcatttaaagaaagtgtcgacagcaatttctatgtatgtc
atagaaaacaacactccagtttctgatataataagcaagcagccagagtccagcaaggat
gatgcagctagtaatgagccttcacaggaaatgacctctcgtgatctaagtgatacggtt
ccctttctagaaaatgacccctccaggaaacactttgaggagtcttttatcctactttgc
tgtaaagattcaatacgcacttatgctacaaaatctgtagttcatggggataataaatct
gtttgcaaagtgaagcttgacgagccttgttgttggactactacttttatgaaagatggg
aaagcatgtgcgctactactactctttcagactggagatatcgagattagatctctgcct
gatctagagttggtggagcggacctctttaatgtcagttttaaggtggaatttcaagcca
aatatggacagggcaataagttccatggagaatggccatattactctggcaaatggttct
gaactagctttcatgtccctattagctagtgaaaatgatttcagaattccagaatctttg
ccgtctcttcatgatgaagttctcgcagctgcagcagatgctgccatgaaattctccact
cagaagaagaaacagacgtcgttgcagggtgggggcccaaatattttaggtactctagtt
aaaggatttaaagcgggaaaaacgaatcataatatggatctcagtcagatgtcgaagtca
aactttagtcatctggaaggtgtttttatgaagaatgcactccacccagaaccgtcccca
actaaggaaggtctagaagaagtggagctcgatatagatgatattgaaattgatgaacca
gttcctgtggtttctacttcatctcatagcacacaaaatagtaaaagaggaactgaaaga
gaaaagttgcttgattccgagggtgatgatgccaaacccagacttaggacacgtgaagaa
atcatagcaaaatatagaaaaactggggcccaggatgcatcatcagcggctggacaagca
agagacaagcttctagaacgccaagaaaaacttgagagaattagccaaagaactgaagaa
ctacgcaatggggctgaagactttgcatcattggcaaatgagcttgtcaaggtaatggaa
aatcgcaatcgaaaatggtggcagatatga
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