Solanum dulcamara (climbing nightshade): 129882527
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Entry
129882527 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129882527 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129882527
03015 mRNA surveillance pathway
129882527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129882527
03041 Spliceosome [BR:
sdul03041
]
129882527
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129882527
Spliceosome [BR:
sdul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
129882527
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
129882527
NCBI-ProteinID:
XP_055812835
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All DBs
Position
3:complement(34665597..34681349)
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AA seq
890 aa
AA seq
DB search
MSGGFFRGTSAEQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVKMDVMKPWIAKRVTELI
GFEDEVLINFIYSLLERKVANGKELQISLTGFMERNTGKFMKELWALLLSAQNNASGVPQ
QFLEAKEEEMRKKKAEMDRIANEIHKKKERENRELDQEKRKKMDDYCSNSREKNVSREPT
PKHQLQVRLMDDLDPVERNGSRVRNRVSKSPRSADHSLSSRRSRSISKSFSNSRSYSGER
PRSRSTSGSPEERRGRSLSSERAHRSPPRCSVSPRRKHSPRRSHSPPRHRQRSTSRVRRR
SPSPVRYRRRSPFRRRSRPPLRRRSRSPFRRRSRSPLRRRSRSPIRRRTRSPMWCRSRSP
SRCSPLRYRSRSPIKRRSPLRHRTPSPMQRRSPSLVSRGYHRSPLSPRRSSPFAVQRKPS
ISGRKRSLTPARRSLSSQESLSPSPIYRRSPSPIRKRISKNERSPVRSPRGRIRSREKYS
PVRYASPVNTEPHKVSRSLERRRPISSGSPLKKIYDRKDSLEKELPLLPQLSRSPSVPES
PSRSRSDSESPPTKRGRSPSEDRGRRSTSNWRERKTIDTDSPSPSKLREHKVSSDISEKV
ADEKEMNHSGEAFEHNPRSSRKIPTTPDPYKDLGKGWVEKESSDIHSRSDRLELRKRNEV
IKSEKISGRMEHTKELDKQKSPSTHRHSNSVKMLKKSYDGESFKEDKENLSHTNDTKGKE
LHVESEAPLTSSRKVEQNDLISNAGSGFEESEKRRAKVKEKRKHKRSDRYESTSEDSFDS
DVEDRKEAKRRRKEERRLKKEEKHRRREERRCRKEERRSQKLKSKSANAISSPSDTERNP
DSRASDDEHLRKEDRHGHEIEESESLQKRLEIELREKALESLRAKKGVSH
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcgggtttttccggggcacgtctgccgagcaggacactcgcttctctaataag
caagctaagctgttaaaatctcagaagttcgctcctgaattggaacatctggtggacatg
acaaaagtgaagatggatgtaatgaagccatggattgctaagcgagttactgagcttatt
ggtttcgaagatgaagtgcttatcaatttcatttatagccttcttgagcgaaaggtagct
aatggcaaggagcttcaaatttcacttactggattcatggaaagaaacactgggaaattt
atgaaagagctttgggcgctactacttagtgcacagaacaatgctagtggtgttcctcaa
cagttcctagaagccaaagaagaggaaatgagaaagaagaaggctgagatggatcgaatt
gcaaacgagattcacaagaaaaaggagagagagaatagggagctggatcaagagaaaagg
aagaagatggatgattattgtagcaattcgagagagaaaaatgtttcacgggagccaact
ccaaaacatcagcttcaggtgcgcttgatggatgatttagaccctgttgagagaaacgga
tcaagagtaagaaacagggtctctaaatccccacgttcagcagatcattcactctcctcc
aggagatcaaggtcaatcagcaagtcattctccaattcgaggagttactcgggtgaaagg
cccaggtcacgaagtacatccggatctccagaagagaggagaggtcgctccctttcatct
gaaagggcacatcgctctccaccaaggtgttctgtttcacctcgtaggaagcattcacct
cgacgatcccattctccaccaaggcacaggcaaagatcaacctctagagtacgtcgaagg
tcaccttctcctgtgcgataccgaagacgttctccattcagacgtagatcaaggcctcca
cttcgacgtagatcgaggtctccgtttcgacgtagatcaaggtctccgcttcgacgtaga
tcaaggtctcccattcggcgtagaacacgatcccctatgtggtgtaggtcaaggtctcca
agtagatgctcaccattgcgatacagatcaaggtcacctattaaacgtcgatcaccactt
cgacacagaacaccatctccaatgcaacgtaggtccccttctctagtgagtcgagggtac
caccgatctccattgagtcctcggcgaagttctccatttgcagtgcaacgaaaaccctcc
atttctggtaggaagagatccttaacccctgccagacggtctctttcatctcaagaatca
ctttccccctcacccatttaccgcaggtctccttcaccaattagaaagagaatatcgaag
aatgaaaggtcaccagttcgatctcctcgaggaaggataaggagccgtgagaaatactcc
cctgttcgatatgcttctccagtaaacactgagccccataaagtatccagatctttggaa
cgtagacgtcctatatcttctgggtcacctctgaagaagatatatgaccgcaaggattca
ctagaaaaagagctgcctttgctgcctcagctaagccggtcaccatctgttccagaatct
ccaagtcgctccagatctgactcagaatctccaccaacaaaaagaggaaggagtcctagt
gaagatagagggcgaagaagtacttcgaactggagggagagaaagacaattgacactgac
agccctagtccaagtaaattgagagagcacaaagttagttctgacatttctgagaaagtt
gctgatgagaaagaaatgaaccattcaggggaggcgtttgagcataaccctaggtcttca
agaaaaatacccacaacacccgatccatataaagatcttgggaaggggtgggttgagaaa
gaatcttctgacattcatagccgttccgatcgcttggagttgagaaagagaaatgaagtg
attaagagtgaaaaaatttcaggaaggatggagcacacaaaggaactggataaacaaaag
tcaccatcaactcatagacactctaattcagtgaagatgttaaagaaatcatatgatggg
gagagtttcaaagaagataaggaaaacctgtctcacacaaacgataccaagggcaaagag
ctacatgttgagtcagaagctcccctcacttcatcaaggaaagttgagcagaatgatcta
attagtaatgcgggttctggtttcgaggaaagtgaaaaacgtagagctaaagttaaggaa
aaaagaaagcataagaggtctgacagatatgagtcaacgtcagaggatagttttgattct
gatgttgaggataggaaggaggctaaaaggaggaggaaagaggagagaagattgaagaaa
gaggagaagcatcgccggcgggaggagaggcggtgcagaaaggaagaaagacgttcccag
aaactaaaatcgaagtcagctaatgccatatcctcgccttcagatacagagaggaatcct
gatagtcgtgcttctgatgatgaacatctgaggaaggaggatcgacatggacatgagatc
gaggagtcagagtccttgcagaagagacttgagattgagctgcgggagaaggctctcgaa
tctcttagagcaaaaaagggcgtcagtcattaa
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