Solanum dulcamara (climbing nightshade): 129882538
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Entry
129882538 CDS
T09577
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129882538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129882538
03009 Ribosome biogenesis [BR:
sdul03009
]
129882538
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129882538
Spliceosome [BR:
sdul03041
]
Complex A
U1 snRNP components
U1 related factors
129882538
Complex B
129882538
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
129882538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Gsf2
Pyrid_oxidase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129882538
NCBI-ProteinID:
XP_055812857
LinkDB
All DBs
Position
3:complement(38061628..38076218)
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AA seq
567 aa
AA seq
DB search
MSYVPPHLRNSAAGKTTTTATINSEGADPFSPKHTSHQSRIPSVYANGELEKASNGYSNS
TRRSPVNYSLPKTAAVPDPVFPQWKPSERVLRLKSEQIEEIRLRLNVDVNVAPGSLPAPS
PIESFPDMCLHPSIMKDIEKHGYTAPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFSIP
MIQHCLAQRPLQRGDGPLALVLAPTRELAQQIEKEVTAFSMSLDSFKTAIVVGGTNISEQ
RSELRAGVHIVVATPGRLIDHLQQGNTSLSRIAFVVLDEADRMLDMGFEPQIREVMRKLP
EKHQTLLFSATMPAEIEALAQDYLTNPVRIKVGKVSSPTANVSQTLEKVPENDKIDRLLN
LLVEEAAQAEKSGHPFPLTIVFVERKTKCDEVAEALTQQGLLATALHGGRSQNEREAALR
DFRHGPINILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGRATSFY
TDRDMYLVAQIRRAIADIGSGNDVTIAMGKTARRKEREATAAEKEARNELSKLSLVGSTV
NVEDKYRHMIAPSMIKKEGAADDAWDD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctccgcacctgagaaattctgctgcgggaaaaaccactaccacagct
actataaacagtgaaggcgccgatcccttctctcccaaacacacctcacatcaatccaga
attccttctgtctacgccaatggtgaactcgaaaaggcgtccaacggttactccaattca
actcgccggagccccgtcaattactccttgcccaagactgctgccgtccctgaccccgtg
tttccccagtggaagccttccgaacgtgttcttcgtcttaaatccgagcagatagaagag
attcgactgcggctgaatgttgatgtcaatgttgctccaggctcacttcctgcaccctca
cctattgaatcatttcctgatatgtgcttgcatccaagcatcatgaaggatattgaaaag
catggctacactgcaccgacttctattcaggctcaagccatgcctgttgctcttagtggc
agggatctcttgggttgtgctgaaactggtagtgggaagactgctgcattcagcatacct
atgatacagcactgcctggctcaacgacctcttcaacgtggtgatggacctttggcatta
gtgttggcacctacgagagagcttgcacaacaaatagagaaagaggttacggctttcagc
atgtctttggattcctttaagaccgcaatagttgtaggtgggacaaacattagtgagcag
aggtctgagcttcgagcaggagtacatatagttgttgctactccgggaagacttatagat
catttacaacaaggaaatacttccctcagcaggatcgcttttgtagttttggatgaggct
gatagaatgcttgacatggggtttgaacctcagataagagaggtgatgcgaaagcttccg
gaaaagcatcaaacattgctcttcagtgccaccatgccagcagaaattgaagcattggca
caggattacttgactaatcctgtgcgaataaaagttggaaaagtaagcagcccgactgca
aatgtttctcagactttagagaaggtacccgaaaatgataagattgatcgccttttgaat
ttgctggttgaggaggctgctcaagctgaaaaatctggtcatcccttccctttgaccatt
gtatttgtggaacggaagacaaaatgtgatgaagtagcagaagctttaacgcagcagggt
ttgcttgcaactgcacttcatggtggtcgtagccaaaatgaaagagaggctgcccttcgt
gatttcagacatggacctatcaatatcttggttgctactgatgtcgcgtctaggggattg
gatgtcacaggagttgcacatgtaattaacctagatcttccaaagaccatggaagattat
gtacaccggattggacggactggtcgtgcagggtcaacgggccgagctacttcattttac
actgatcgtgatatgtatcttgtggctcaaataagaagagcaatcgctgatattggttct
ggcaatgatgtgaccattgctatgggaaagactgcaagaagaaaggagagagaagctaca
gctgcggaaaaagaagcaaggaatgaattgtctaaactctctttagtagggtccacagta
aatgtggaggataagtataggcacatgattgccccttcaatgatcaaaaaggagggagcc
gcagatgatgcttgggatgactga
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