Solanum dulcamara (climbing nightshade): 129882900
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Entry
129882900 CDS
T09577
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
129882900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129882900
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
129882900
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
DUF7885
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
129882900
NCBI-ProteinID:
XP_055813362
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Position
3:73983822..73987959
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AA seq
581 aa
AA seq
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MAYSFPEEVLEHVFSFLTSDKDRNAVSLVCKSWYEIERWCRRRIFVGNCYAVSPRIMIRR
FPEVRSVELKGKPHFADFNLVPEGWGAYVYPWIVAMSRSYPWLEEIKLKRMVITDESLEL
ISKSFKNFKVLVLSSCDGFTTDGLAAIAANCRNLRKLDLGESEEEDLSGHWLSHFPDSCT
SLVSLNIACLASEVSFLALERLVARSPNLRTLRINRAVPLEKLPNLLRRTSQLVEFGTGA
YSADVRSDFFSNLTEAFSGCKQLKCLSGFWDVVPAYLPAIYPVCSRLTSLNLSYATCQNP
ELGKLISQCHNLQRLWVLDYIEDTGLEELAANCKDLQELRVFPSDPFAPEPNTTLTEQGL
VAVSDGCPKLQSVLYFCRQMTNAALVTIARNRPNMIRFRLCIIEPRTPDYLTLGPFDTGF
GAIVENCKELRRLSLAGLLTDRVFEYIGTHAKKLEMLSIAFAGDSDLGLHHVLSGCDSLR
KLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKMLAQKMPRLNVEVIDERGPP
DTRPESCPVEKLYIYRTVAGRRFDTPGYVWTMDEDAAVRLS
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcattcccggaagaagtattggagcacgtcttctccttcctcacctccgac
aaggaccgtaacgcggtatctctagtctgcaaatcgtggtacgagatcgaaaggtggtgc
cggaggagaatattcgtcggaaactgttatgccgttagccctaggatcatgatccgacga
tttcctgaagtcagatctgtagagcttaaagggaagcctcattttgctgactttaatctt
gtacctgaaggttggggagcttatgtttatccatggattgtagctatgtctaggtcttat
ccatggcttgaggaaattaagcttaagcgtatggtaattactgatgagtcattggagttg
atttctaagtcgtttaagaacttcaaagttttggttttgtcttcctgtgatgggtttact
actgatggacttgctgctattgccgctaactgcaggaatctgagaaaactagacttggga
gaaagtgaagaggaagaccttagtggacattggctaagccatttccctgatagctgcacg
tcacttgtttcacttaacattgcctgtttggcttctgaggtcagtttcttagctttggag
cgcttggttgctcgctctcctaatttgaggactcttcggataaatcgtgctgtgcccctt
gagaagcttccaaacctgcttcgccgcacatcccagttggttgaatttggtacaggtgct
tactctgctgatgtgcggtctgatttcttctcaaacctgacagaagctttttcaggctgc
aagcaacttaaatgcctgtctgggttttgggatgttgtaccagcttaccttccagctata
tatccagtgtgctcaagactcacctctttgaatttgagctatgctacctgtcaaaaccct
gagcttggcaagctcataagtcagtgtcacaatttgcagcgtttgtgggtgctagactac
attgaagataccggtcttgaggaacttgctgccaattgtaaggaccttcaagagctgagg
gtgtttccttctgacccttttgctcccgaaccaaatacaaccttgacggagcaaggcctt
gtagctgtctcagatggctgcccaaagctacagtctgttttgtacttctgccgccaaatg
actaatgcagctttagttactattgctaggaatcgtcctaacatgattcgttttcgcttg
tgtatcattgagcctcgaactcctgattacttaacccttgggccgtttgatactggtttt
ggggccattgtggagaactgtaaggaattgcggcgactttcacttgctggcctccttacc
gatcgtgtctttgaatacattggcacccatgcaaaaaagttagagatgctttccatagct
tttgctggtgatagcgatttgggactccaccatgtgctctctggttgtgatagtcttcgg
aagttggagatcagagattgtccgtttggagacaaggctctcttggctaatgctgcaaag
ctcgagacaatgcgatccctttggatgtcttcttgttcagtaagttttgaagcatgtaag
atgctagctcagaagatgcccaggcttaatgtggaagtcatagatgagaggggtcctccg
gatacaaggccagaaagctgccctgtggagaaactttacatatatcgaaccgtggctgga
cggaggtttgacacacctggttatgtttggacaatggatgaagatgcagctgtaaggttg
tcctga
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