Solanum dulcamara (climbing nightshade): 129883198
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Entry
129883198 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129883198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129883198
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129883198
Spliceosome [BR:
sdul03041
]
Complex A
U2 snRNP components
U2 related factors
129883198
Complex B
129883198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
129883198
NCBI-ProteinID:
XP_055813781
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All DBs
Position
1:87513903..87519555
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AA seq
1118 aa
AA seq
DB search
MEELKHKSKREDESKKRHRDKEDRDRDKRDRDHHHRDKKDRETEKSSRYEREKSADRDRA
KHKDRHSRGDKEREKSSKVRDDDERPRDKVKEREKKDKEDREEREREKEREREKERERER
EKERKRDRERREREKEKERNREKDRHREVYEKGSDDEVDDKDRERKRRKRDNDDHHKERD
RERSSKPNNRLREDSTDEVSAEKNQKSREEDLAEEQRKLDDEMEKRRRRVQEWQELKRKK
EESEREKLGVDAGAEEPKLGKTWTLDGESDDEDAEGKIGMDIDMDDSAKVMDEENGADKV
VSSSIGSDSPVIQNGGDGLVDDDEIDPLDAFMNSMVLPEVEKLNKSVVNSLDGESSSLKE
RKSKEEKPKMSMKKTMGRIIPGEDSDSDYGNIENDEDPLEEEDDEEFMKRVKKTKVEKLS
LVDHSKIEYPPFRKNFYIEVKEISRMSAEEVSANRKQLELKIHGKDVPKPIKTWHQTGLS
SKMLDTIKKLNYEKPMSIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPL
MSGDGPIGLIMAPTRELVQQIHSDIKKFARVMGLTCVPVYGGSGVAQQISELKRGAEIVV
CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFS
ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG
KILIFVHTQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA
RGLDVKELELVINYDVPNHYEDYVHRVGRTGRAGKKGCAITFISEDDARYAPDLLKALQL
SEQVVPDDLKSLADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGF
EEDKSDSEDEDEGIRKAGGDLSQQAALAQAAALVAASKASMASAAAPVSAGQLLPNGGLP
VALPGVLGINIPGATAVTAGNGLSVGSNDVTARATALAAALNLQHNLAKIQADAMPEHYE
AELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYVPPGKVPGFGERKLYLFIEGP
TEQSVKRAKAELKRVLEDITMQASSLPGSAQPGRYSVV
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggaagagttgaagcacaagtcgaagagagaagacgaatcgaagaagcgtcaccgtgat
aaggaggatcgagatcgcgacaagagggacagagaccatcaccatcgtgataagaaggat
agagagacagagaaaagcagccgctatgaaagagagaaaagtgctgatagagatagggca
aagcacaaggataggcacagtagaggagataaggagcgtgaaaagagcagcaaggttcgt
gatgatgatgaaagacctcgagataaagttaaagagcgagaaaaaaaggataaggaagat
cgcgaagaaagagagagggagaaagagagggaaagagagaaggagagggagagggagagg
gagaaggagaggaagagagatagagagaggagagaaagggagaaggagaaggagcggaat
cgtgaaaaggatagacaccgggaagtatatgaaaagggcagtgatgatgaagttgatgac
aaggatcgtgaaaggaagaggcgaaagagggataatgatgatcatcataaggagagggat
cgtgaaaggagtagcaaaccaaacaacaggctcagggaagacagcactgatgaagtatca
gcagaaaagaatcagaagagtcgagaagaggatctagcggaggagcaaaggaaattagat
gacgagatggagaagcgaaggaggagagttcaggaatggcaagagctaaaaaggaaaaaa
gaggagtctgagagggaaaagcttggggttgatgcaggtgctgaagaacctaagttgggc
aagacttggacattggatggtgagtctgatgatgaagatgctgaggggaaaattggcatg
gatattgatatggatgatagtgccaaggtcatggatgaagaaaatggagctgacaaggta
gttagttctagcattggatctgattcccctgttattcagaatggcggtgatggtttagtt
gacgacgatgagattgacccgttagatgcttttatgaactctatggttttgcctgaagtt
gagaagcttaacaaatctgtagtcaatagtttggatggtgaaagttccagtttgaaagag
agaaagagcaaggaagaaaagcctaagatgagcatgaagaaaaccatgggaagaattatc
cctggtgaagattcagattcagattatgggaacattgagaatgatgaagatcctttggag
gaagaagatgatgaagaatttatgaaacgggtgaagaaaaccaaggttgagaaactatca
ttagtggatcattcaaagattgaatatcctcctttcagaaagaacttctacatagaagtt
aaggaaatttcaagaatgagtgctgaagaggtttctgctaacaggaaacaactggaattg
aagatccatggcaaggacgttccgaaaccaatcaaaacatggcatcagacaggactgtcc
tccaagatgctagacactatcaagaagctgaattatgagaagcccatgtctattcaagct
caggctctgccagtaattatgagtggccgagattgtattgggattgctaagacaggttct
ggtaaaactctggcatttgtattaccaatgctgagacatattaaggaccagcctcctctg
atgtctggagatggtcctattgggctaataatggcccctactagagagcttgtgcagcaa
attcatagtgatattaagaagtttgcaagagtgatgggtctcacctgtgtacctgtgtat
ggaggttcgggtgttgctcaacaaataagtgaattgaaacgaggagccgaaattgttgtg
tgcactccaggtaggatgattgatatactctgtacaagtggtgggaagattacaaatctg
cgaagagtaacctacttggtcatggatgaagctgatcggatgtttgatatgggatttgaa
cctcagatcacaagaattgtccaaaacacacggccggaccgtcaaacagtcctgttctct
gcaacttttcctcgtcaggtcgaaatactagcccgtaaagtgttgaacaagcctgttgaa
atacaggtaggtggtaggagtgttgtgaacaaggatataacacaattggttgaggtgagg
ccagaaagtgatagattccttcgtcttcttgaattacttggtgaatggtatgaaaaaggt
aaaattttgatatttgttcacacacaggagaaatgtgatgctttatttagggatttgctc
aagcatggctatccctgcctctcccttcatggggcaaaggatcagactgatcgtgagtcc
accatatctgactttaaaagtaatgtatgtaatttgttgattgctactagtatagcagct
aggggcttagatgtcaaggagcttgaactggtaatcaattatgatgttccgaaccattat
gaggactatgttcatcgtgttgggcggactggtcgagctggtaagaaaggttgtgccatc
acattcatatccgaagatgatgcaagatatgcacctgatcttctaaaagctttacaattg
tcggagcaagttgttccagatgacctgaaatctcttgctgatagtttcatggcaaaggtt
aatcaaggacttgagcaagcacatgggactggttatggtggtagtggttttaaatttaat
gaagaagaggatgaagtgagaagagcagccaaaaaagcacaggcaaaagaatatggattt
gaggaagataaatcagattcagaggatgaagatgaaggaataagaaaagcaggtggtgat
ctctctcagcaggctgcccttgctcaggctgctgctcttgttgctgcttccaaagcgagt
atggcttcagcagcagctccagtttcagctggtcagcttcttcccaatggtggattacct
gttgcattgcctggtgtacttggtattaatattccaggtgcaacagcagttactgctggg
aatggactgtcagttggctctaatgatgtgacagccagagcaacagcattggcagctgcc
ttaaacttgcagcataacttagcaaagattcaggccgatgcaatgcctgaacattatgaa
gcagagttagagataaatgattttcctcaaaatgctcgttggaaggttacacacaaggag
actctgggtcctatttctgaatggacaggagctgccatcaccactcgaggacagtatgtt
ccacctggcaaggtaccagggtttggggaaaggaagctgtacttgttcattgaaggcccc
acggagcaatctgtcaagagagcaaaagcagaattaaaacgtgttttggaggacattacc
atgcaagcatcatcacttcctggttcggctcaaccgggcagatactcagttgtataa
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