Solanum dulcamara (climbing nightshade): 129883236
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Entry
129883236 CDS
T09577
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129883236
09123 Folding, sorting and degradation
03018 RNA degradation
129883236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129883236
03041 Spliceosome [BR:
sdul03041
]
129883236
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129883236
mRNA degradation factors
5'-3' decay
Lsm complex
129883236
Spliceosome [BR:
sdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129883236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
129883236
NCBI-ProteinID:
XP_055813831
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Position
3:complement(80037255..80040795)
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AA seq
88 aa
AA seq
DB search
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAILVPGGSPPDE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgaacaacccttctcagcttcttccttctgagttgattgatcgttgcattggt
tccaagatatgggtaataatgaagggtgataaggaacttgttggtacacttagaggattt
gatgtttatgttaacatggttcttgaagatgttactgaatatgagatcacttctgaaggg
cggaggataacaaaacttgatcagatattgctaaatggaaacaatattgctatcctggtt
cctggagggtcaccacctgatgagtga
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