KEGG   Solanum dulcamara (climbing nightshade): 129883236
Entry
129883236         CDS       T09577                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03018  RNA degradation
sdul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129883236
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129883236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdul03019]
    129883236
   03041 Spliceosome [BR:sdul03041]
    129883236
Messenger RNA biogenesis [BR:sdul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     129883236
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     129883236
Spliceosome [BR:sdul03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    129883236
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 129883236
NCBI-ProteinID: XP_055813831
LinkDB
Position
3:complement(80037255..80040795)
AA seq 88 aa
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNNIAILVPGGSPPDE
NT seq 267 nt   +upstreamnt  +downstreamnt
atgtcttcgaacaacccttctcagcttcttccttctgagttgattgatcgttgcattggt
tccaagatatgggtaataatgaagggtgataaggaacttgttggtacacttagaggattt
gatgtttatgttaacatggttcttgaagatgttactgaatatgagatcacttctgaaggg
cggaggataacaaaacttgatcagatattgctaaatggaaacaatattgctatcctggtt
cctggagggtcaccacctgatgagtga

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