Solanum dulcamara (climbing nightshade): 129883289
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Entry
129883289 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129883289
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdul03009
]
129883289
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
129883289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
CEP104-like_TOG
DUF1848
Motif
Other DBs
NCBI-GeneID:
129883289
NCBI-ProteinID:
XP_055813913
LinkDB
All DBs
Position
3:complement(81002160..81022605)
Genome browser
AA seq
2681 aa
AA seq
DB search
MATHSDMYAVKSLNKSPGRRRFTFKTFSERIEDVDIDVYRNLDPLKAEPNEGSSFFRDCI
TEWRELNTAEDFISFYEEVFPLVQTLPQIILQKELIVAKLLSRLDMKGRLSLEPILGLIA
ALSRDLLEDFLPFLQRIADSLACLLKSGADREPDIIEQIFKLWSFIMMYLQKYLVKDVVD
VLKVTVQLRYYPKEYVHEFMADSVSFILRNAPVKQLIKGVRKLMFEVVKKPLEIRKSAVS
SLLWYVVRGSSSRLHSRAEQVLRLLIDKSLFVIGDQFTGGAEAILEVLGLALQRLCEELE
ATELELMWVCLYEEITECVSQGHLLHLGRLLCLLVSTLQASYIQKISDYQEVLQLIQLLV
QTYILPYPTVKAIDQTSNIVDKVMQSILCILDGLYRANNISTLSSVSMQWAPVFDLRNKS
LLSFVEDLLLKDPCIVHFFRARIISALTDMIEISEEEVIHLLQIFFKRLPVQGHSFFDEV
PNEKLSRIHSFVQETIGRWIRRIQKKPYSIQIEENELAILWGIIGCYPYIVGGSANESLL
MDLVNALDELLSTESADISGHPRTTWQSLVGAALGSYCKSLANQNSRCDDSVVSRFLDLA
RKHKTCSQVLSPVADFLDSVCGSIIQADASTKKYHPELVVSKLVDALGVFAANLSHHDKS
LRLSTLRILCHYERLTDVTSSNEQPLEKKMRMDNPQTTLVDYHGNNVIHLLLLIEETPLS
IATSRKVILLISKIQMSLSAGRVAEKYMPVVFSGIVGIFHNRFSYLWNPTLECMAVLLSQ
YFGLVWDRYIEYLDHYLSVFLGSHDEAAQSKGDSLETTKNLNGSFRSYVCSVSDGASCAT
VFSLLIQCLQRIPSVAESRSRQIIPLFLKFLGYSIEDLKCVELYNQEGCKGKEWKSVLQE
WLSLFRLMRNPRSFYLNQFFKEVLLYRLLEEDDADLQNKVLDCLLNWKDDFLLPYDQHLK
NLINSKSLREELTTWSLSRESDLVDTRHRAFLVPVVIRVLSPKVRKLKALASRKHASIHH
RKAILGFLAQLDVEELPLFFALLIKPLVSASQGAAAKSAWPWTTSETLQQGLDSLSVLEH
FSRDCINAISWKKRYGFLHVIEDIVAVFDEGHISPFLDLLMGCIVRLLDSCTSTLEGTRN
DGGLADYGRQVEDKIMTNIAAKQCKDLRSLCLKIISFILSKFEDHGFSPEFWDLFFVSVK
PLVASFKQEGASSEKESSLFSCFLAMSRSSKLVPLLSREKNLIPDVFSMLAVSTASDAIV
SSVLKFVENLLYLDVELGNEDNSLRRLLLPHIDVLVCSLHHLFVHDGAHKRKIVKYPGEK
ELNVFKLLSKHVKGPLAARKFLDILLPLLSKKSKDPEICVGTLQIIKDIVEPLGSESSKK
IVKSVSPLVISAGLDVRTSICDVLDAVAGNDSSVHAMANLLRELNATSTVELGDLDYDTV
IAAYEKISADFFHTVPEEHALIILSHAIHDMSSGDLILRQSAYRLLLSFVEFSSQILDRE
LKSEQESSGSWVRHILSNFFLKHMGTAMNKEDTIQKVWIDLLRDMVLKLPTVEDFKSFAV
LYSEDPEQDFFNNIVHLQRHRRARALLRFKNVISSGNLSKVLINKVFIPLLFKMLLDGQV
GKGENIRSVCLEAVGSISKFMEWRLYYALLNRCFREMTLKPDKQKVLLRLIGSILDQFHF
SETHPDHVTKDSMQGIQNTCLLESGKVIGSSELADIQMCLQKDMLPRVHKMLTADTDNLN
VNISLILLKLLKLLPGDIMESHLPSIMHRIANFLKNRLESVRDEARAALAACLKELGLEY
LQFVVKVLRGTLKRGFELHVLGFTLNFLLSKFLLNPSSGKLDYCLEDLLSIAVNDILSDV
SEEKEVEKIASKMKETRKQKSYDTLKLIAQSITFKTHALKLLAPILKHLQKQLTPKVKSK
FENMFSHIAAGIQCNPSVNQTELFIFGYSLIKDGTRNESPGHAETPTLMEGKQKKDGVSS
QIAKSDKLVSIDPRYSHLITEFALGVLQNYMKDMKFDKKDEQLLSMLDPFVRLLGECLNS
KYENVMSASLRCLSPLLRLPLPSLESQAEKIKNSLLNIAQGSVTSSNPLLESCVKLLTVL
LHSTKITLSTDQLHMLIQFPLFVDLERNPTFVALSLLKAIVSRKLVVAEIYDIVNRVAEL
MVTSQVESIRKKSSQILLQFLLDYHISEKRLQQHLDFLLSNLRYEHSAGREAILEMLHAV
IMKFPVSIIDEQCQTFFLHLVVCLANDHDNRVRSMTGTVIKLLVGRVSPRSLQSILEFSR
SWYLGDKTHLWSAAAQVLGLLIEVLKDGFQKYIDSLLPVMRNILQSAVNVIANKQVDLPN
DATISSWKEAYYSLVLFEKILNQFPKLCFRKDLEDLWEAICLLLLHPHMWLRNISNRLVA
CYFATVTEACKENLELPQGTYFLMRPSRLFFIATSLCCQLKVLQTDAAASDLITQNLVFS
ICSLHSFLGKNECTDKFWSTIEHDEQGLLLKAFQQLDSRKGRNIYLSLVSDLSDQEDESQ
RFLVISYLLKTMGKISLHVEDMQMKVIFNCFKSVSPKLIDQSRLLSPEGEVDCQSFAYHM
LLPLYKVCEGFAGKVISDDVKQLAEGVRGSISNVIGMQSFVQIYSHIRKNIKSKRDKRKQ
EEKVIAVVNPMRNAKRKLRIAEKHKAHKKRKMMAMKMGRWM
NT seq
8046 nt
NT seq
+upstream
nt +downstream
nt
atggctacacactcagatatgtacgctgttaaatcgctcaacaaatccccgggtcgccgt
cgttttactttcaagacattttcagagcggattgaagatgttgacattgatgtgtacaga
aatctcgaccctttaaaagctgaacccaatgaaggttcctccttcttccgggattgcatt
acagaatggagagaattaaacactgcagaggattttatttcattttacgaggaagtattt
cccttggtacagacactaccgcaaattatactgcagaaggaactgatagtcgcaaaactt
ctttcaagattggacatgaaagggagactatcccttgagccaatcctcgggttgattgca
gccttatctagagatctcctggaggacttcttaccctttctccagaggattgctgactct
ttggcgtgtcttctcaaaagtggtgctgatagagaaccagatataattgagcagattttc
aagttatggtcttttattatgatgtacctgcaaaaatatcttgttaaagatgttgttgat
gttctaaaggtaaccgtacaattaagatactatcccaaggagtatgtccacgaatttatg
gccgactcagtatcattcatattgaggaatgctccggttaagcagcttataaaaggagtg
aggaagcttatgtttgaagttgtgaagaaaccattggaaataaggaagtccgctgtcagt
tcactattgtggtatgttgtgagaggaagctcctcaaggttacactcaagggctgaacaa
gtgttgcgcctactgattgacaagtctctgtttgtaataggtgatcagttcacagggggt
gctgaggctattcttgaagttcttggtctagcactgcagagattatgtgaggaattggaa
gctacagagttggagttgatgtgggtttgcttatatgaggagataactgagtgtgtatct
caaggccacctattgcacctcggtcgccttttgtgccttcttgtttctaccctgcaagct
agttacattcagaaaatttctgattaccaagaggtgcttcaattgatccagttacttgta
cagacttacattctgccttatcctactgtgaaggcaattgatcaaacatcaaacattgtt
gacaaagttatgcagtcaatactttgcattcttgatggtctatatagagctaataatatt
tctactctctcttctgtttcaatgcaatgggcgcctgtgtttgatttgaggaataagagt
ttgctgtcttttgtcgaagatctcctattgaaggacccttgcattgtccatttcttcaga
gctcgcattataagtgcattaactgatatgattgagatttcagaagaagaggttatacat
ttgctgcagatcttttttaagaggctgccagtacaagggcatagcttctttgatgaagtt
ccaaatgagaagctttcaagaattcacagttttgtacaagaaaccattggccgctggatt
cggcggatacaaaagaaaccatattctatccaaattgaagaaaatgagttggccatactg
tggggaatcataggctgttatccttatatagtaggtggttcagcgaacgagtcattgcta
atggacttggttaatgctctagatgagcttttgagtactgaatctgctgacatttctggt
catcccagaactacctggcagagcttggttggtgctgcattgggttcttattgtaagtca
ctggccaatcaaaattcccgatgtgatgattctgtcgtaagcaggttcttagatctggca
aggaagcacaagacatgttctcaagtgttgtctccagtagctgattttttggattcagtt
tgtgggtccataatccaagctgatgcaagcactaaaaagtatcacccagagcttgtagtg
agtaagttggtggatgccttaggcgtgtttgctgcaaatttgagccaccacgacaagagt
ttgcggctttcgaccttgagaatattgtgccactacgaacgtttgactgatgtcacttct
agtaatgaacaaccccttgagaagaaaatgagaatggataatcctcagaccactcttgtg
gactaccatggcaataatgtgattcatctcctacttttgattgaagaaacgccgctttct
attgcaaccagtagaaaagtcatcctactgatatccaaaatacagatgagtttatctgct
ggaagggtagctgaaaagtatatgcctgttgttttcagtggaattgttggaatttttcat
aaccgctttagctatttgtggaacccaacattggagtgcatggctgtcctccttagtcaa
tactttgggctggtgtgggacagatatattgagtaccttgatcattatctgtctgttttt
ctgggctctcatgatgaagctgctcaaagcaagggggattcgttagaaacgactaagaat
ttgaatggaagcttcaggtcttatgtctgttcagtgtctgatggtgcgtcgtgtgcaaca
gttttttctttgttgattcagtgcttacagagaattccttctgttgctgaatcgcgttca
cgacaaatcatacctctgttcttgaagtttctaggctatagtattgaagatcttaaatgt
gtggaattatacaatcaggagggttgtaaggggaaagagtggaaaagtgttcttcaagaa
tggttgtccttattcagactgatgcgaaaccctaggtctttttatctcaatcaattcttc
aaggaggttttgctgtacagacttctcgaggaagatgatgctgacttgcaaaataaggtc
cttgattgcctgttaaattggaaagatgacttcttacttccgtatgatcagcatctaaaa
aatctgatcaattcaaaaagtctaagggaggagctcacgacatggagcttatctagggaa
tcagatcttgttgatacaaggcatagagctttccttgtgcctgttgttatcagagtactg
tctccaaaagtcagaaagttaaaggcactcgcttctcgtaagcatgcaagtatccatcat
cgaaaggcgattcttggcttcttagctcagctagatgttgaagagcttcctcttttcttt
gctttgctgataaaaccccttgtatctgcttcacaaggtgctgcagcaaagagtgcatgg
ccttggactacatctgaaactctacagcaagggcttgactcattaagtgtcttggagcat
ttttccagagattgtatcaatgccatttcatggaagaagagatatggttttctacatgta
attgaggatattgtagctgtttttgatgaagggcacattagcccttttcttgatctgtta
atgggatgtattgtgcgtctcttggatagctgtacatcaactcttgaaggcacacgaaat
gatgggggactggctgattatggtcgccaagtagaggataaaatcatgacaaacattgct
gcaaagcagtgcaaggatttgagatctttatgcctgaagatcatctcttttatccttagc
aaattcgaagatcatggtttcagtcctgaattttgggatttgttctttgtgtcagtaaaa
cccttagttgctagtttcaaacaggaaggtgctagtagtgagaaggaaagctcgttattt
tcttgttttctggctatgagtagaagttccaaacttgtgcctctgttgtcccgagaaaag
aatcttatacctgatgtattttcgatgctagcagtctcaacagcatcggatgccatcgtt
tcctcggttcttaagtttgtggagaatcttttatatcttgatgttgagctaggtaatgaa
gacaactcgcttaggagattattgcttcctcacattgatgtactagtatgcagtttgcat
catctttttgtacatgatggtgcacataagaggaagattgtcaaatatcctggggaaaaa
gagctcaatgtattcaagcttttatcaaagcacgtaaagggaccattggctgcaaggaag
tttcttgatatcttgcttcctcttctgtcaaagaaatccaaagaccctgagatttgtgta
ggcactttacagattattaaggatattgtagaaccattgggtagtgaaagcagtaaaaag
atcgtcaaatctgtttctccactcgtaatttctgctggcttggatgtccgcacttctatt
tgtgatgttcttgatgctgtcgcagggaatgattcttctgtacatgctatggcaaatctt
cttcgtgaattgaatgccacgtctactgtagagttgggtgaccttgattatgataccgtg
attgctgcttatgaaaagataagtgcagattttttccacactgtcccggaagagcatgca
ttgattattctgtcacatgctatacatgatatgtcatccggggatcttattttgagacag
agtgcatatagattgctgctttcgtttgttgagttttctagtcaaatactcgatagagag
ttgaaatctgaacaagaatcttctggatcctgggttaggcatatcctaagcaacttcttt
ttgaagcacatgggtactgcaatgaacaaagaagatacaatccagaaggtatggatcgat
ctacttcgagatatggtcctgaagcttccaacagtggaagacttcaaatcatttgcagtt
ctttacagtgaagatccagagcaggactttttcaacaatattgtgcatttgcaaagacac
aggagagcaagggctttgttacgctttaagaatgtcatcagttctggaaatttgtctaag
gttctcataaataaagtgtttatccctcttctcttcaaaatgttgcttgatgggcaagtt
ggaaagggtgaaaatattagaagtgtatgtttggaagctgttggatcaatttctaaattc
atggagtggagattgtattatgcattactcaatagatgctttcgggagatgacactgaaa
ccagataaacaaaaggtgttattgcggttaataggctccattttggaccagttccatttc
tcagagactcatcctgatcatgtcaccaaggattctatgcaaggtattcaaaatacttgt
ttgttagagtcaggcaaagtcattggctcttctgaacttgcggatatacaaatgtgcctc
caaaaggatatgcttcccagggtacacaaaatgttgactgctgatactgataatctcaat
gtaaacatcagtctaattctgcttaagttgctcaagctacttcctggagacatcatggaa
tcacaccttccatctataatgcatcgcattgcgaatttccttaagaatcgtttggaaagt
gttcgtgatgaagccagagctgctttggctgcttgtttaaaagaactaggattggagtac
ttgcaatttgttgtcaaagtattgagaggcactctaaagagagggtttgaattgcatgtt
ttgggattcactctcaattttctactatcaaaatttcttctaaatcccagtagtgggaag
ttggattattgtttagaggatcttctctcgattgcagtaaatgatatacttagtgatgtt
tcagaggagaaagaggttgagaagattgcttcaaagatgaaagagactaggaagcaaaag
tcatatgataccctcaaattgatagcccaaagcatcacattcaaaacgcatgctctgaag
ctgcttgcgccaattcttaagcatctacaaaagcagctgactccaaaagtaaaatcaaaa
tttgagaatatgttctctcatatagctgctggaatacagtgcaatccttctgtaaaccag
acggaactctttatctttggatatagtcttattaaagatggcacaagaaatgaatctcct
gggcatgcagagacaccaactttaatggaaggtaagcaaaagaaagatggagtaagcagc
cagattgctaaatcagataagttggtcagcattgatccacgatattcccatcttattacc
gaatttgctcttggagtgcttcagaattacatgaaggacatgaaatttgacaagaaagat
gagcagttgttgtcaatgctggatccatttgtaagattattgggtgaatgcttgaactca
aaatatgagaatgtcatgtctgcctcacttaggtgcttatctcctctgctgaggctccct
ttgccatcacttgaatctcaggcggagaagataaagaattcattactgaatattgctcaa
ggttcagtaacttccagtaatccattattggagtcttgcgttaaattgctaactgtgctt
ttgcatagcactaagatcacactttctacggatcaactgcatatgctaatccagtttcct
ctttttgttgatcttgaaagaaatcccacttttgttgctctctcactgttaaaagcaata
gtgagtaggaagttggtagttgcagaaatctatgatatagttaaccgtgttgcagagttg
atggtgactagtcaagttgaatcaattcgtaagaaaagcagccaaattttgctgcagttt
ttactggactaccatatatccgagaaacgccttcaacagcatcttgatttcttactttca
aacttaagatatgagcattcagctggaagagaagccatccttgaaatgcttcatgctgtt
ataatgaaattcccagttagcatcatagatgaacaatgtcaaacgttttttctgcatttg
gtggtttgtctagcgaatgatcatgacaacagagtccgttcaatgactggtacagtcata
aagttacttgttggacgagtcagcccccgttcactccagtcaattcttgagtttagtcga
tcctggtatctgggagataaaacacatttatggagtgctgcagcacaggttttggggtta
ctcattgaggtacttaaagatggtttccaaaagtatattgatagcctcttgcctgttatg
agaaacatcttgcaatctgctgttaatgttattgcaaataagcaagtggatctacccaat
gatgcaacgatttcatcttggaaggaagcatattattcactggttctgtttgaaaagata
ttaaatcaatttcctaagttgtgcttcagaaaggatcttgaggatctgtgggaagcaata
tgcctgctgcttttgcatccgcatatgtggttgcgcaacatatcaaaccgtcttgtagct
tgctactttgccactgtgaccgaggcttgtaaagaaaaccttgaactgccacaaggaact
tactttttgatgaggccaagtagacttttcttcatagctacttctctttgttgtcagctg
aaggtgctgcagactgatgctgctgccagtgatctcattactcaaaatcttgtcttttca
atttgctctctgcattcattcttaggaaaaaatgaatgtacagataagttctggtccacc
attgaacatgacgagcagggtcttctacttaaggcttttcaacagcttgattcaaggaaa
gggagaaacatctatctatctcttgtgtctgaccttagcgatcaagaagatgaaagccag
cgcttcttggtcatttcttatttgcttaagacaatgggaaagatttcccttcatgtggag
gatatgcagatgaaagttatcttcaattgtttcaaatcagtatcaccaaagcttatagat
cagagtagattgttgtcccctgaaggtgaggtggattgccaaagctttgcatatcatatg
ctgttgcccctgtacaaagtttgtgaaggatttgccggaaaagttatatcagacgacgtg
aaacaactggctgaaggagtgcgtgggagcataagcaatgttataggaatgcagagtttt
gtccaaatctacagtcatataaggaagaatatcaaatcgaagagggataagaggaaacaa
gaagagaaggtcattgctgtggttaatccaatgagaaatgccaagaggaagctgaggatt
gcagaaaagcacaaagcacacaagaagaggaaaatgatggcaatgaagatgggaagatgg
atgtag
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integrated database retrieval system
