Solanum dulcamara (climbing nightshade): 129883345
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Entry
129883345 CDS
T09577
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03440
Homologous recombination
sdul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129883345
03460 Fanconi anemia pathway
129883345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdul03032
]
129883345
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129883345
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
129883345
DNA replication proteins [BR:
sdul03032
]
Eukaryotic type
DNA Topoisomerases
129883345
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
129883345
FA (Fanconi anemia) pathway
129883345
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
129883345
NCBI-ProteinID:
XP_055813969
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Position
3:81731805..81744648
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AA seq
864 aa
AA seq
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MAPKVLMVAEKPSIALSIASVLSGAQMSTRRGSTEVHEFDAMFLGSRAHYKVTSVIGHVF
SVDFPATFQDWTTTDPADLFQAPILKKETNPKAHICRHLSQEARGCTHLVLWLDCDREGE
NICFEVIECTGFHTSDGRRIYRARFSSVTEKDILKAMNSLAEPNRDEALSVDARQEIDLK
VGVAFTRFQTSYFNGKYGNLDARVISYGPCQTPTLGFCVDRYLQITMFKPEKFWMLHPYI
MYKGYELKLEWERSRLFDADVAAMFRNRIVEVGTMRVVRVSEKLESKSRPSGLNTVNLLK
VASSALGFGPQLTMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLGALVHNPVFGAYAQ
KLLTESYNKPRAGTDAGDHPPITPMRSASEDSLGNDAWKLYQYICQHFLGTLSPDCKYRR
IKVEFESGGEQFQCVGQLATVKGFTSIMPWLAISEKNLPEFAVGEKIVISKVELDEGNTS
PPDYLSESELISLMEKHGIGTDASISVHINNICERNYVQVQAGRRLAPTPLGISLIRGYQ
CIDSDLCLPDIRSFIEHQITLVAKGQANHSMVVHHVLEQFRRKFSYFVKQIENMDALFEA
QFSPLSDSGRLLSKCGKCLRYMKYISTQPARLYCGTCEEVYYVPQKGTVKLYKELTCPLD
NFELLLCSMPGPEGKSFPLCPYCYNCPPFEGINTFFGAPKTGDSSKLGKGVGMPCFLCPH
TTCPHSVIAQGVCACPECSGTLVLDPVSAPKWRLYCNMCNCLVSLPEGAHRISTTQDKCP
ECDSTIIEVDFNKKTTPLKDGATLHKGCILCDELLHSLVEMKHGRSFSRHARRGRGRGRG
RGGYRGRGRGNDKQQDPKMSFRDF
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggctccaaaagttcttatggtagcggagaagcctagtattgctttatcaattgcctca
gttttatctggtgcacaaatgtcaacacgaagaggtagtacagaagtccatgagttcgat
gcgatgtttcttggatcacgtgcacattataaagtgacttcagtgattggtcatgttttc
agtgtagattttccagcaacttttcaagattggacaactacagatcctgcagatcttttc
caggcaccgatacttaagaaggaaacaaacccaaaggctcatatttgtaggcatctaagc
caggaagctcgaggttgtacacatttggtgctatggttggactgtgatcgtgaaggagaa
aatatatgctttgaagttatagagtgcactggatttcacacaagcgatggtagaagaatt
taccgtgctcgattctcttctgttactgaaaaagatattctgaaggcaatgaatagccta
gccgaacccaacagagatgaggcattgtctgtagatgcacgccaagagatcgatttgaaa
gttggagttgcatttacacgtttccagactagctatttcaatgggaaatatggcaatctt
gatgcaagggttatctcctatgggccatgtcaaactcctacgcttgggttctgtgtggat
cgttacctgcaaatcactatgttcaagccagaaaagttttggatgctgcatccatacatt
atgtacaaggggtatgaactcaagttagaatgggaacgtagcaggttgtttgatgctgat
gttgctgcaatgtttcggaacagaatagtagaggttgggacaatgagagttgttcgtgta
tcagaaaagctggaatccaaaagtcgtccttccggtctaaacactgtaaatcttctgaag
gtagcttcaagtgcactgggctttggtccccagttaactatgcaattggctgagcgtctg
tacactcaaggttttatcagctatccacgtacagaaagcacagcatatccttcttctttt
gacttcaaaggaacactgggggcgttagtgcataatcctgtatttggtgcttatgctcaa
aagcttttaactgaaagttataataagccacgggcaggaactgatgcaggcgatcatcct
ccgataactccaatgcgttctgctagtgaggatagtttggggaatgatgcatggaaactg
taccagtacatctgccagcattttttgggaactctctctccagattgcaaatatagaagg
ataaaagttgaatttgaaagtggtggagagcaatttcagtgcgttgggcagcttgccaca
gtcaaaggattcacctctattatgccatggctggctattagtgagaagaatcttcctgag
tttgctgtaggagagaaaattgtgatttctaaagttgaactagatgaggggaacacttcg
cctccggattatctcagcgaaagtgagctgatctctttgatggagaaacatggtattgga
acagatgcatcaatctctgtgcatattaacaacatatgcgaacgcaattatgtccaggta
caagctgggcggcgattggctccaactccgctgggtatcagcttgataagagggtaccaa
tgcatagattctgatctctgtttgcccgacatacggagtttcattgaacaccagattact
ttggtagctaaaggtcaagcaaatcattcaatggttgtgcatcatgtactagaacaattc
agaaggaagttcagttattttgttaagcagattgaaaacatggacgcattgtttgaagca
caattttctccactctctgactcgggacgtctcctcagcaaatgtggcaaatgcttgcga
tatatgaaatacatatctactcaaccagctcgactgtactgtggtacctgtgaggaagtc
tattacgtacctcagaagggtactgtcaagctgtacaaggagcttacttgcccccttgat
aatttcgagctgttactatgtagcatgcccgggccagaaggcaagtcgttccctctctgt
ccttattgctacaactgtcccccatttgaaggcatcaatacattttttggcgctcctaaa
actggcgattcttccaagttgggaaagggagtcggaatgccttgcttcctctgtcctcac
accacatgtccacattctgtgattgcacaaggcgtttgtgcctgcccagaatgcagtggt
acacttgttcttgatcctgtcagcgctcctaaatggaggctctactgcaacatgtgcaat
tgcctcgtttccttgcccgaaggtgctcatcggatttctacaactcaggataagtgtcct
gaatgcgactcaactatcatagaagttgatttcaacaagaaaacaacgcccttaaaagat
ggagctacacttcataagggatgcattctttgcgatgagctgctgcattcacttgtggaa
atgaaacatggaagatcattttctagacatgccaggagaggacgtggtagaggaagagga
agaggaggttatcgcggaagagggcggggcaacgacaaacaacaagaccctaaaatgagt
ttccgtgatttttaa
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