Solanum dulcamara (climbing nightshade): 129884348
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Entry
129884348 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129884348
03041 Spliceosome [BR:
sdul03041
]
129884348
03036 Chromosome and associated proteins [BR:
sdul03036
]
129884348
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129884348
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129884348
mRNA cycle factors
Common to processing body (P body) and stress granule
129884348
Spliceosome [BR:
sdul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129884348
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
129884348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129884348
NCBI-ProteinID:
XP_055814642
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All DBs
Position
1:89125414..89133432
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AA seq
601 aa
AA seq
DB search
MPTSWADSVSAAENLAAACPKSSYVPPHLRNRPPSINPPQASYTGPAASSQDQIGYGGPN
VGGSRWSGPRNDFRSGYGGGGGRGSGWNNRTGGWDRGREREANPFAEDEAEPFVEPENSG
INFDAYEDIPVETSGDNVPPPVNTFVEIDLGEAVNLNIRRCKYVKPTPVQRHAIPIALAG
RDLMACAQTGSGKTAAFCFPIISGIMRGQFPRPPRPRVAFPLALILSPTRELSCQIHDEA
KKFAYQTGVRVVVAYGGAPINQQLRELERGVHILVATPGRLVDLLERARVSLQMIRYLAL
DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLALDFLSSYIFLAVG
RVGSSTDLIVQRVEYVQETDKRSHLMDLLHAQRANGAHGKQALTLVFVETKKGADSLEHW
LCMNGFPATAIHGDRTQQEREYALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDIPN
DIDDYVHRIGRTGRAGKSGLATAFFNENNSSVARSLADLMQEANQEVPAWLSRYAARSSH
GGGKNRRGGNRFGGRDFRKDSSFNRGGVTDYYGGANMSSGYGAPGGHAAPYGGAGVTSAW
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatcctgggctgattcggtttctgcagccgagaatctggctgctgcttgccca
aagtcatcctatgttccaccacatcttagaaacaggcctccttcaataaatcctcctcag
gcctcctatactgggcctgctgcatcctctcaggaccaaattggttatggtggcccaaat
gtaggtggaagtcgttggagtggtccaaggaatgatttccgatctggttatggcggtgga
ggaggccgtggcagtggctggaataacagaaccggtggttgggatcgcgggagggagcgg
gaagctaacccctttgcagaggatgaagctgaaccctttgttgagccagagaattctggg
atcaactttgatgcatacgaggatattcctgtggagacaagtggggataatgtaccccct
cctgtgaacacttttgttgagattgatttaggtgaagctgtcaacctaaatatcaggaga
tgcaagtatgttaaaccaacccctgtgcaaaggcatgctataccaattgcacttgctggt
agagatttgatggcttgtgctcagactggttctggaaaaacggctgctttctgttttccc
atcataagtggaataatgaggggacaatttccaagacctccacgtccgcgggtggcattt
ccgctggctcttattctttctccgactagggagctctcatgccaaattcatgatgaagct
aagaaatttgcatatcagactggtgtcagggtggttgttgcttatggtggtgctcccata
aaccaacagcttcgagaactagagagaggagtgcatattcttgtggcaacacctgggcgg
ttggttgatttgcttgagagagctagagtctcgttacagatgataaggtacttggctcta
gatgaggcagatcgaatgcttgatatgggtttcgaacctcaaataaggaaaattgtgcaa
caaatggacatgcctccaccaggtgtaaggcagacaatgctgttcagtgccacttttccc
aaagagattcagagacttgcattggattttctttcaagctatatcttcttggctgtggga
agggttggctctagtactgatctgattgtccaacgagttgaatatgttcaggagactgac
aagagaagccacctgatggatctccttcatgcacagagggcaaatggtgctcatggcaag
caagctcttacccttgtttttgtcgagacgaaaaaaggagctgattcactggagcactgg
ctttgtatgaacggtttccctgctactgctattcatggcgatagaactcagcaggaaagg
gaatatgccctgagatccttcaaaagtggtaatacaccaatcttggttgcaacggatgtg
gcagcacgtggtcttgatataccccatgttgctcatgttgtcaactttgacattccaaat
gacattgatgattatgtccaccgtattggaagaacaggacgagcaggaaaatcaggttta
gcaacagccttctttaatgagaataattcttctgtggcaagatcactggctgatctgatg
caagaagcaaaccaagaagtacctgcttggctctctcgctatgctgctcgatcttcacat
ggaggcggcaaaaaccgtcgtggtggaaatcgttttggtggccgtgatttccgaaaagat
tcctctttcaatcgaggaggggtcacagactactatggtggggccaatatgagcagtggc
tatggtgcacctggtgggcatgctgcaccatatggtggtgctggtgtgactagtgcctgg
gactaa
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