Solanum dulcamara (climbing nightshade): 129884404
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Entry
129884404 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 32-like
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdul03009
]
129884404
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129884404
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
90S particles
Helicases
129884404
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
gag_pre-integrs
Helicase_C_2
rve_3
rve
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
129884404
NCBI-ProteinID:
XP_055814683
LinkDB
All DBs
Position
4:80111289..80119458
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AA seq
967 aa
AA seq
DB search
MARGNKHHGLYWTTTSTCANMVNAVESDNSSTLWHKRLSHISEKGLNVLAKKKLLLDFQS
AKIRKATVERETTKKLKCIRTDNGGEYCGSFDEYCMHQGIRHQETPPTTPHLNRLAERMN
RTLMEKVRCLLSEAKLPNSFWGEALLADAHVINLSLAVVCNVMFQIEFGMTKMLYDPIEK
KLVRSRGIVFMENQTIKDIDKAEKLKSSSSDGVVHFDQVPHTMCMMLMVVEEANNPLRRS
TRQHIPSSNYSPNEYVLLADELNQSPKGMRDLKNKWVFKVKVEEHSLKPSSAGIQFGYGM
NVGFTMYERLLDSSYSCESAPCYFLTKERRCPISYVVAASIYFLVLEKLYKARWGPEDVV
GCIIMSPTRELAGQLFEVLKSVGKHHGFSAGLLIGGRKDVDAEKEHVNVLNILVCTPGRP
LQHMDETPNFDCSQLQVLVLEESDRILDVGFKRELNAIISQLPKHRQTLLFSATQTKSVQ
DLARLSLKDPEYLGVHEESDTATPNRLQQTAMLVPLDKKFDMLWSFIKAHLNSRILVFLS
SCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSQFCEQRSVLFSTDVASRGLDFN
KAVDWVVQVDCPEDCAAYIHRVGRTARYFSGERSVLFVMPSEVKMLEKLEEKKIPLRVIK
ANEKRIQSVSDLLASLLVKYPDLQHLSQRAFVTYLKSIHKQRDKETLDVTKLPIDEFSAS
LGLPMTPKIRFLKQKLKGKTESEALSLIRENTINDNLLEFPIKEPEFPNKDPDTGKSDVE
EVDEDILLAKETQGVGENINSKEDDMLATRVTNKKKLKINVHRPVGTRVVFDEEGNTLPP
LARLAASSSGADAVQLNKEKVNQRYAELRKNLKVADKEDKDLDEKRIKEKMKNKRGREED
EDEELSGSDMEIPRGRVDKKTKVYFDSDNEDGERTGHMSKKEGIAADAISLAEQEELALK
LLNSMHS
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtggtaacaaacatcatggtctatactggactacgacttctacttgtgccaat
atggtgaatgcagttgaaagcgataactcttcaacattatggcacaagaggcttagccac
atcagtgagaaaggacttaatgttttggccaagaagaaattgttgttagatttccaaagt
gcaaaaattagaaaagctacagttgaaagagaaactacaaagaaactaaaatgtattcgt
acagataatggtggtgaatattgtggatcatttgacgaatactgcatgcatcaaggtatt
agacaccaggagactcctcctacgactcctcatcttaataggttggctgagaggatgaac
agaaccttgatggaaaaagttagatgtttgctttctgaagcaaagttgccgaactccttt
tggggtgaagccttattggctgatgcacatgttattaacttatctcttgctgttgtttgc
aatgtgatgttccaaatagagtttggtatgacaaagatgctatatgatccaattgagaag
aagcttgtgagaagccgcggtatcgtctttatggaaaatcaaaccattaaagatattgac
aaagcggaaaagctaaaatcttcaagttctgatggcgtagtccattttgatcaagttcct
catacaatgtgcatgatgttgatggttgtggaagaagcaaataatcctcttaggaggtcc
acaagacaacacattccttcatccaactattcacctaatgagtatgtgctactcgctgac
gagttgaaccagagtcctaagggaatgagagatttgaagaacaagtgggtattcaaagtt
aaagttgaagaacacagcttgaagcccagtagtgcaggcattcagtttggatatggtatg
aatgttggcttcacaatgtatgagcgtctgttagatagctcttattcatgcgaatcagcc
ccttgttatttcttgacaaaagaacgtagatgtccaatctcttatgtggttgctgcttcg
atttatttcttggtgctagagaaattgtataaagctcgatggggaccagaggatgttgtt
ggatgcatcataatgtctcccacaagggagttagcgggtcaacttttcgaagtacttaaa
tctgttgggaagcatcatggctttagtgctggccttctgattggtggccgcaaagatgtt
gacgctgaaaaagagcatgttaatgtacttaacatcctggtctgtactcctggccgacct
cttcagcatatggatgagacaccaaattttgattgttcacaacttcaggttttagttctg
gaggaatcagatcgtattcttgatgtggggtttaagagggaattaaatgcaatcatttca
caattgcctaaacataggcagaccttgttgttttcagcaacccagacgaagtctgttcaa
gatctggcaaggctcagtctgaaagaccctgaatatttgggtgtacatgaggagtctgat
actgcgactcccaaccgcttgcaacaaacagcaatgcttgttcctcttgataagaaattt
gacatgttgtggagttttataaaggcacatcttaattcaaggatattggttttcctatca
agctgcaagcaggtaaaatttgtttttgaaactttcaaaaaactccgtcctgggattccc
ctcaagtgtcttcatggaaggatgaagcaagataaaaggatgggaatttattcccaattt
tgtgaacaacgttctgttctgttctccactgatgttgcttcgaggggacttgattttaat
aaggcagttgattgggttgtccaggtggactgtcctgaagattgtgctgcttacatacac
agagttggccgcactgctcgttacttttcaggcgaaagatctgttttatttgtgatgcca
tctgaagtgaagatgcttgaaaagttggaagagaaaaagattccccttcgagttatcaag
gcaaatgaaaagaggatacagtctgtctcggatcttcttgcttctttattggtcaagtac
cctgatctacagcatctgtctcaaagggctttcgtgacatatttgaagtccatacacaaa
cagagagataaagagacacttgatgttacaaaacttcctattgatgaattctctgcttca
ttgggtcttcctatgacccccaaaatccgatttctgaaacagaaactcaaagggaagaca
gagtctgaagcattatctctcatacgggagaacacaattaatgataatttgttggaattt
ccaattaaggagccagaatttccaaataaggatccagatacaggtaaatcagatgtagag
gaagtggatgaagacatccttctagctaaggagacgcaaggagttggagaaaatattaac
agcaaagaggatgacatgctggccactagagttacgaataaaaagaaactaaagatcaat
gtccatagaccagtagggacaagggttgtgtttgatgaggaagggaacaccttacctcct
cttgcaagattagcagcctcaagcagtggtgcagacgctgttcagctcaacaaagaaaaa
gtaaatcagagatatgctgagttaagaaagaacttgaaggtggccgacaaggaagacaag
gatttggacgaaaaacgaatcaaggagaagatgaagaacaagagagggagagaggaggat
gaagatgaagaactctctgggtcagacatggaaatccccagaggtagagtcgacaagaaa
acaaaggtttattttgacagtgacaacgaggatggcgagaggacagggcacatgtctaaa
aaggagggtattgctgctgatgctatatctttggcagaacaagaagaactggctctgaag
ttgctaaattccatgcactcataa
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