Solanum dulcamara (climbing nightshade): 129885290
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Entry
129885290 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129885290 isoform X1
KO
K11804
DDB1- and CUL4-associated factor 8
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129885290
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
129885290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_EIPR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_IP5PC_F
Beta-prop_IFT122_1st
PQQ_2
WD40_like
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
129885290
NCBI-ProteinID:
XP_055815486
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Position
4:716362..734506
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AA seq
550 aa
AA seq
DB search
MMRKMTRSSIDCAVVDVWKRAVGELSTRNFAHRLGASEDLVLRLDVFRKLEKHRGCVNTV
SFNADGDIVISGSDDRRIILWDWETGKIVLSFHSGHHNNVFQAKIMPYTDDRSIVTCAAD
GQVRQAQILEHGKVETKLLAKHQGRAHKLAIEPASPHIVYTCGEDGLVQHIDLRTDTATE
LFTCQPLRVRRYMSVLHLNAITIDPRKPYLFAVAGSDEFARIFDIRKYKWDGSTDFGQPA
DYFCPPHLVGDENVGITGLAFSDQSELLVSYNEENIYLFTKDMGLGPDPSPTSPLYNESD
ESEMGQDHESDASAVDMKSGANIGPQVYKGHRNSETVKGVNFFGPKCEYVVSGSDCGRIF
IWKKRGGDLVRVMEADKHVVNCIESHPHTAVLASSGIENDIKIWTPKATERANLPTNIQK
GSTPRQFHLFDFGGDEDNRIYFFGDGSDDDYGGSSDNEDEDDSDMDEDEDDFSDGMDDDD
DDDDDDDNDDDDDDDDDGFEDLDIHEDGNGDEFFDTVGDPDFDDSSDNDQDAPSDSCCDD
DDSNENDIDE
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggaaaatgacgagaagtagcatcgattgtgcagttgttgatgtttggaaacgg
gcagtcggtgaactctctaccagaaacttcgctcaccgtctcggtgcctctgaggatctt
gtgctccgtcttgatgtattccggaagctggagaagcacaggggctgtgtgaatacggtt
agcttcaatgctgatggtgatatagtcatatcaggttctgatgaccgaaggatcatactc
tgggactgggaaactgggaaaattgtgctttcattccattcaggtcatcataataatgtc
tttcaagcaaaaatcatgccatatactgatgatcgaagcattgttacctgtgctgccgat
ggacaggtgagacaagcacagattctagaacatgggaaggtggaaacaaagttgctggcc
aaacatcaaggacgagctcacaaattggcaattgaacctgcaagcccccatattgtttac
acttgtggagaagatggattagttcaacatatagacttgagaacagacactgctacagag
ctttttacttgccaacccttgcgggtgaggagatatatgtctgtacttcatctaaatgca
attacgatagatccaagaaaaccctatttgtttgctgttgctggatcagatgaatttgct
agaattttcgacattcgcaaatataagtgggatggatccactgattttggccagccggct
gactacttctgtcccccacatctagttggtgatgagaatgtggggataacaggcttggct
ttctctgaccagagtgagcttcttgtttcatataatgaagaaaatatttatcttttcaca
aaggacatggggctgggacctgatccatcccctacttcgccattgtacaatgaaagtgat
gagagtgaaatgggccaagatcacgaatctgatgcgtctgcagttgacatgaagtctgga
gcaaacattggtccacaagtctacaaggggcacagaaactctgaaacagtgaagggtgtg
aacttttttgggcccaagtgtgaatatgttgtgagtggatcagattgtggtagaattttc
atatggaagaaaaggggtggggatcttgttcgtgttatggaagcagataagcatgtagtg
aactgcattgagtcccatcctcataccgcggtgcttgccagcagtggaattgagaatgac
ataaaaatatggactccaaaagccactgaaagagctaatttacctacaaatattcaaaag
ggttcaacacctcgtcaatttcatttgttcgattttggcggtgatgaagataatcgcatc
tacttctttggcgacggaagtgacgatgattatggtggtagtagtgacaatgaggatgaa
gatgatagtgatatggatgaagatgaagatgatttctccgatggtatggatgatgatgat
gatgacgacgacgacgacgacaacgacgatgacgatgacgatgacgatgatggttttgag
gatttagatatccacgaagatggaaatggtgatgagttctttgacaccgtaggggaccct
gattttgatgattcctcggataatgaccaagatgctcctagcgattcatgctgtgacgat
gatgactccaatgaaaatgacattgatgaatga
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