Solanum dulcamara (climbing nightshade): 129885884
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Entry
129885884 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH7, chloroplastic-like isoform X1
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
sdul03012
]
129885884
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129885884
Translation factors [BR:
sdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129885884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
UBA_DHX29
DEAD
Helicase_C
HA2_C
HA2_N
DSRM_DHX29
nSTAND3
AAA_19
ATPase
AAA_22
NPHP3_N
ABC_tran
Rad17
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
129885884
NCBI-ProteinID:
XP_055816324
LinkDB
All DBs
Position
4:7348039..7377091
Genome browser
AA seq
1439 aa
AA seq
DB search
MAPKKKPQSKGKGSSSTGTKLQISAENENRLRRLLLNSGRSTQSPATTPTPADDALSKAQ
KAKKLRSIYEKLSCEGFSDDQIERALSALKERATFEAALDWLCLNLRGNELPLKFSSGTS
QLNEGSVGIISTAREDWVPSADSSVAEVKDEKIPKVSVLPKGRSDSESLRTVERAQADWI
RQYMEQQEEDEAESWESGFLNDGSLEQGPRKKSSIESIVQDFHTARLEAIHAKERGDKKG
HEQASRTIRKIKQEISSLGLPDDILESAHESASDHAVLDMSSEKLEVDDVTSHNFRTSNI
QEHEIGMDEVAVNNSSNEFTENNPSSVPLDDKAASGGEPEDVELGDFLFEEDSSPDVSAT
VLELQKKEKMRELCSQKNLEKLEGIWKKGDPQKIPKAFLHQLCQRLGWEAPKYAKIPGKG
NISSYSISIMRKASGRGKSRKAGGLVTIELPSHDHASSTAEDAQNRVAAYALHRLFPDLP
VHMPITEPYASLILQWEEGDSMKDIVDDQVERRAYFVDSLLGASGSETITLSDVSNNASK
EKFLEPHTIEDKTVPVDFTAKNLRKEAESLSLKKEQEGRKKLKKYQEMLKSRASLPIAGL
KGEILHSLEENDVLVICGETGCGKTTQVPQFILDDMIESGRGGHCNIICTQPRRIAATSV
AERVADERCESSPGSSESLVGYQVRLDSARNERTKLLFCTTGILLRMFSGNNDLAGVSHI
IVDEVHERSLLGDFLLIVLKSLIQKQSALGTGKLKVILMSATVDSHLFSHYFGNCPVITA
QGRTHPVSTYFLEDIYESINYRLASDSPASLNYGTSTREKNAPIGNRRGKKNLALSGWGD
ESLLSEEYINPYYDPSNYQNYSGQTQKNLRKLNEGIIDYDLLEDLVCYIDETYPEGAILV
FLPGVAEIHTLLDRLSVSFQFSGQASEWILPLHSSVASEDQKKVFMRPPENIRKVIIATN
IAETSITIDDVVYVVDSGKHKENRYNPKKKLSSMVEDWISQANARQRRGRAGRVKPGICF
CLYTSYRYEKLMRPYQIPEMLRMPLVELCLQIKLLSLGNIKLFLSMALEPPKDEAIMSAI
SLLYEVGAVEGDEELTPLGYHLARLPVDVLVGKMLLYGGVFGCLSPILSISAFLSYKSPF
VYPNDERQNVERAKLALLSDKLGCETDSGNGNWQSDHLLMMVAYKKWEKILRENGVKAAK
QFCSSYFLSSSVMYMIRDMRIQFGTLLADIGLINLPKKSEIDWKKKEKLDSWLSDVSQPF
NIHSNHSSILKAILCAGLYPNISARDEGIATTVLGNLKQSANVSAKSNPAWYDGKREVHI
HPSSINSDLKAFQYPFLVFLEKVETNKVFLRDTTVVSPYTILLFGGPINVQHQTGTVTID
GWLEVAAPAQTAVLFKELRLTLHDILKELIRNPQASKVTDNEVLRSIIQLLLEEDKQRK
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgaagaagaaaccgcaatccaaaggtaagggttcttcttccacaggtaccaaa
ttgcaaatttctgccgagaacgaaaataggctccgacggctgttgcttaattccggccgg
tccactcagtctccggctacgactccgactccagcagatgatgctctctcaaaagcacag
aaggccaagaaacttcgttctatctacgaaaagctttcttgcgagggcttttccgacgat
caaattgaacgcgctttatccgctctaaaggagagagccacgtttgaagctgctttagat
tggctatgcttgaatttgcgaggaaatgagcttcctctgaagttttcaagtggtacttcc
caattgaacgaaggttctgttggtatcatatcaactgctcgagaagattgggttccttca
gcagattcatctgtggcagaagttaaagatgagaaaatacctaaagtttcagttctgccg
aagggtcgaagtgatagtgaatctctacgtacagttgaacgcgcacaagctgattggatc
cgtcagtatatggaacaacaggaagaggatgaagctgaaagttgggaatctggttttctt
aacgatggttccctagagcagggcccgcgaaaaaaaagtagtattgagtccattgtccaa
gactttcatactgctaggctggaagctattcatgcaaaagagcgcggtgacaaaaagggc
catgaacaagccagccgaaccattcggaagatcaagcaggagatatcttctctaggacta
ccggatgatatcctggaatctgcacatgaaagtgcttccgaccatgccgtgttagacatg
tcctcggaaaaacttgaggttgatgatgttacttcacataatttcagaacgtccaatatt
caagaacatgagataggaatggatgaagtggctgtcaataacagctctaatgagttcact
gaaaacaatccatccagtgttcctttagatgacaaggcagcttcaggaggagaaccagaa
gatgtagagcttggtgatttcttatttgaagaagattcctcccctgatgtgtcggctact
gtactagaactgcagaagaaagaaaagatgagagaattatgtagtcagaaaaacttagag
aagttagaaggtatatggaaaaagggagatccacaaaagattccaaaggcttttcttcac
caactttgtcaaagattagggtgggaggccccaaaatatgcgaaaatacctggaaaagga
aatatttcaagttactcaataagtataatgcgcaaagccagtgggagaggtaagagcaga
aaagctggagggctagtaacaatcgagcttcctagtcatgatcatgcttcttctactgct
gaggatgcccaaaatagagttgccgcctatgctctccatcgcttgtttccagatctccca
gttcacatgccaattaccgagccatatgcatcacttattttgcagtgggaggaaggtgat
tccatgaaagatattgtggatgatcaagtggaaagaagggcctattttgtggattcattg
ctgggtgctagtggttcagaaaccataactctttctgatgtgtccaataatgctagcaaa
gaaaagtttttagagcctcacaccattgaagataagacggtgcctgttgattttacagcc
aaaaatctccgtaaagaagcagaaagtctctctctgaaaaaggagcaggagggtaggaag
aaattgaagaagtaccaggaaatgttaaaatcacgggcttcccttcctattgctggctta
aaaggcgagatcctgcattcactggaggagaatgatgttttggtcatttgtggggaaaca
ggttgcgggaaaacaactcaggtccctcaatttatactggatgacatgattgaatcagga
cgtgggggacattgtaacattatatgcacacagccaaggagaattgcggctacttctgtg
gctgaaagagttgctgatgagcgttgtgaatcttcgccaggttcaagtgagtccttggtt
ggttaccaagttcgcctcgatagtgcaaggaatgagagaacaaagctccttttttgtaca
actggcattcttttgagaatgttttcaggaaataacgacttggctggcgttagtcatatt
attgttgatgaagtgcatgagaggtcacttctgggtgattttctgctcattgtcttgaag
agtctcattcagaagcaatctgcccttggtacgggaaaactgaaagttatactcatgtct
gcgacagtagattcacatttgttttctcattactttggcaactgccctgtaattactgct
caaggccgaacacatcctgtttcaacttattttctcgaagatatttatgagagtatcaat
taccgccttgcatctgattctcctgcttctttgaactatgggacatctactagggaaaag
aatgctcctattggcaatcgtagggggaaaaagaaccttgccctctctggttggggtgat
gaatcgttgctgtctgaagagtacataaatccctattatgatcccagtaattatcaaaac
tacagtggacaaactcaaaaaaatttgaggaaattgaatgaaggcattattgattatgat
cttcttgaagatctggtatgctacattgatgaaacataccctgagggtgctatactggtt
ttcttaccgggggttgcagaaatacacaccttactcgatagactgtctgtctccttccag
tttagtggacaggcttctgaatggattcttcctttgcattcttctgtagcatctgaggat
cagaaaaaagtgtttatgagacctccagaaaacattcgtaaggttataatagctacaaat
attgcagagactagcataaccatagatgatgtggtttatgtggttgactctggaaaacac
aaagaaaatcgctacaatccgaagaagaaattgtcaagcatggttgaagattggatatct
caagcaaatgcaaggcaacgtcgaggcagagctggacgtgtaaagccaggaatctgcttt
tgtctttacacttcttaccgatatgagaagctcatgcggccttaccagatcccggagatg
ctgcgaatgccgttggtggaattgtgcttacaaatcaaattgctatcacttggaaacata
aagctatttttgtctatggctcttgaacctccaaaggatgaggctattatgtcagcaatt
tctttgttgtatgaggttggtgccgttgaaggggatgaagagttaactcctctcgggtat
catttggcgagacttcctgttgatgtgttggtggggaagatgctgttatatggtggagta
tttggctgcttgtcaccaattctatctatttcagccttcctgagttacaagtctccattt
gtttatccaaacgatgagaggcaaaatgttgaaagagcaaagttggcacttttgagtgat
aagcttggctgtgaaactgactctggcaatggtaactggcaatctgaccatctcctaatg
atggtagcgtataaaaagtgggagaaaattttgcgggagaatggagtcaaagcagcaaag
cagttttgcagctcatatttcttgagcagttctgtcatgtacatgataagagacatgaga
atacaatttggaacattgctagctgatattggactcatcaacctcccaaaaaagtcggag
attgattggaaaaagaaagagaagcttgacagttggctttctgatgtatcacaacctttt
aatatacattcaaatcattcctcaattcttaaggccatattgtgtgcaggtctgtatccc
aatatatctgcgagagatgaaggcattgctacaactgttcttgggaacctaaaacagagt
gcgaatgtttcagcaaagagcaaccctgcgtggtacgatggaaaacgagaagttcacatt
cacccttcctcaatcaactctgatttaaaagcttttcagtatccatttctcgtttttctt
gaaaaggtagagactaacaaggtatttttgcgagacactactgttgtctctccttatact
atactgctttttggtggcccaataaacgttcagcaccagactggaacagttaccatagat
ggatggctagaagttgcagcaccagcacaaacagctgtgctatttaaggaactccggcta
actcttcatgatattctcaaggagcttattcgtaatccacaggcttccaaggtgactgat
aatgaagttcttagatctataatccagttgctgttagaagaagataaacaaagaaaataa
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