Solanum dulcamara (climbing nightshade): 129885909
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Entry
129885909 CDS
T09577
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129885909
03015 mRNA surveillance pathway
129885909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129885909
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129885909
mRNA cycle factors
P-body specific factors
129885909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
129885909
NCBI-ProteinID:
XP_055816358
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All DBs
Position
4:complement(7647091..7662805)
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AA seq
510 aa
AA seq
DB search
MKGPLDRSKVVLRHLPPTISQSMLLEQVDSRFTCRYNWFCFLPGKSSQKHQTYARAYIEF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKHWSKKDGREGTILKDPEYLE
FLENISKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSVSNG
RPTRRTSGTSTGTPSSSASKRSSEKRRASTTMYVLRDSSKAGSGKDKTYILAPKRDDQQQ
RAEKSGTSAPGSVANAVEEETGGAAEVGKKKILLVKGKEKENPNVSSGSLIQENVAPIIT
ITSSALKQNQRREASGRIIRSILLKDARQNQVPSASQQEKHRVDMDKKPPRPPSVQLFQR
ETIGANEDKVLGTDLHVVHTEKQEKRTRIRDRPDRGVWTPLRRSDSLHASDESLSSSASQ
SSEVPDFVEGSQGETKHGLAIARGAEFRPMGSGRNSHSSFDNGTYKHGGRRGIRDDGISV
GEGKPLRRGGPSSYGTHEKQVWVQKSSSGT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaccgttagatcgatcaaaagtagtgctgcggcacttgccgccgacaatttct
cagtccatgcttcttgagcaagttgattcccgattcacttgtcgctacaactggttctgt
tttctacccggaaagtccagccagaagcatcaaacttatgcaagagcctatattgaattt
aagaggccagaagatgttatcgagtttgcagagttctttgatggacacgtttttgtaaac
gagaaaggtactcagttcaaaactattgttgagtatgctccttcacagcgtgttccaaaa
cactggtccaagaaggatggccgcgaaggaaccatcttgaaagatcctgaatatctggag
ttccttgaaaatatctcaaagcctgttgagaatcttccgagtgcagaaatacagttggaa
agaaaggaagctgaacgcgctggttctgcaaaggatgctcctatagttactcctttgatg
gattacatacgtcagaaaagagccgccaagagtggagctcggaaatctgtatctaatggg
agaccaaccagaagaacgagtggcacatcgacaggaactcctagctcaagtgcatctaaa
cgaagctctgaaaagagaagggcttccactactatgtatgttcttcgagatagttctaag
gctgggagtggcaaagacaaaacatatattctagctccaaaacgtgatgatcagcagcag
cgtgctgagaagtctggtacctctgctcctggatctgtggctaatgcagttgaagaggaa
actggtggagctgctgaagttggaaagaagaaaatcctgctcgtgaagggaaaggaaaaa
gaaaatcctaatgtttctagtggttcattgattcaggagaatgtggcacctattattaca
ataacttcatctgctctgaaacagaaccagcgtcgtgaggcaagtggaagaatcattaga
agtattcttctgaaggatgctcgtcaaaatcaggttccatctgcatcccaacaagaaaaa
cacagggtggatatggacaaaaagcctcctaggccacccagtgtgcagttgtttcagaga
gaaactattggagctaatgaagacaaggttcttggaactgatttgcatgttgtccacact
gagaagcaggaaaagcgcactaggatcagggataggcctgatcgtggtgtttggactcct
cttcgtcgttctgatagcttacatgctagtgatgaatctttatcttcatctgcctctcaa
tcttccgaagtgccagattttgttgaaggaagtcaaggtgaaaccaaacatggtctggca
attgctcgtggtgcggagttcagacccatgggaagtgggcgtaactctcattcttctttt
gacaatggtacttataaacatggtggtcgtcgtggtataagggacgatggaatttcagta
ggggaaggaaaacccttaagaaggggaggtccttctagctatggtacccatgagaaacaa
gtgtgggtccaaaagtcaagttctggtacttag
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