Solanum dulcamara (climbing nightshade): 129885943
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Entry
129885943 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129885943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129885943
03041 Spliceosome [BR:
sdul03041
]
129885943
03009 Ribosome biogenesis [BR:
sdul03009
]
129885943
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129885943
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129885943
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129885943
Spliceosome [BR:
sdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129885943
Complex C
U4/U6.U5 tri-SnRNP related factors
129885943
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
129885943
Transfer RNA biogenesis [BR:
sdul03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129885943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
129885943
NCBI-ProteinID:
XP_055816408
LinkDB
All DBs
Position
4:7983943..7992975
Genome browser
AA seq
992 aa
AA seq
DB search
MGSFKRKSEEFSNESHIPPSKQLKQNDLLGVGEPVACVHDVSYPEGYVPSASTSTLPQQD
SKPAKEFPFPLDPFQSEAINCLNNGESVMVSAHTSAGKTVVALYAIAMSLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDDKGKFREDSFQKALNALVPANEGDKKRENGKWQKGL
VVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLSNDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGICILMVDEKL
EPSTAKFMLKGSADALNSAFHLSYNMLLNQIRSEDGHPENLLRNSFYQFQADRALPDLEK
QAKILEEERNSIVIEEEDSLERYYNLLEQYKSLKRDVRGIVFSPKYCLPFLQPGRLVCIE
CTKVDVDVPTFSINEEVTWGVIINFERVKGLSEDDANKKPEDANYTVDVLTRCIVRKDEV
GRKTIKIVRLKDAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENTLKKVSEVLNRF
SKEGMPLLHPEDDMKVQISSYRKASSRIEALENLFEEYELAKSPLIKEKLKVLHKKKELT
GKIKSIKRAVRTSTALAFKDELKSRKRALRRLGYIRDDVVEQKGKVASEISSADELTLTE
LMLNGTFRNIKVEEMVSVLSCFVWQEKLQDAQKPREELGLLFAQLQDTARQVAKVQLESK
VQIDVENFVSSFRPDIMEAIYAWAKGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQQLIQA
AKSIGDIVLEAKFEEAVAKIKRDIVFAASLYL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaagtcggaagaattctcgaatgagagtcatatacctccaagt
aaacagctgaaacagaatgatttacttggtgtgggtgagccagtagcatgtgtgcatgat
gtatcatatccagaagggtatgttccctctgcttcaacttctactttgcctcaacaagat
tcaaaacctgccaaggagttcccttttcccctcgacccttttcaatctgaagcaatcaac
tgcctcaataatggtgaatccgtcatggtatcagcacacacatcagcgggaaagacagtt
gtggcgttgtatgcaattgccatgtcgctgaagaataaccagcgagttgtatatacttca
ccaattaaggctcttagtaatcagaagtacagagaattcaaagaggagttttcagatgtg
ggtttgatgaccggagatgtcactattgatccaaatgcttcttgcctggtaatgactaca
gaaatctggcgcagtatgcagtacaaaggatcagaggttacaagggaggttgcttgggtt
atttttgatgaggtacactacatgcgtgatagagaaagaggtgtggtttgggaggaaagc
attgttatggccccgaaaaattcccgctttgtgttcctctcagccacagtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcaaccatgtcacattgtttatacg
gactatagacccacaccacttcagcattatatatttccttctggtggtgatgggttatac
ttggtggttgatgataaagggaagtttcgtgaggatagttttcagaaagctttgaatgct
cttgttccagccaatgaaggggataaaaaaagagaaaatggcaagtggcagaagggtctg
gttgttggcaaatctggtgaggatagtgacatattcaagatggttaaaatgattatccag
cggcaatatgatcctgtaatatgtttcagcttcagcaaaagagaatgtgaatttctagca
atgcagatggctaaaatggatctaagcaatgatgatgagaaggtgaatattgaaactata
ttctggagtgccatggacatgttgtcggatgatgataaaaagctgcctcaggtttcaaat
atgcttcccctattaaaacgtggaattggtgtgcatcattctggtttgcttcctatattg
aaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccacagag
accttcagtatagggttgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagacaaatttaggtggttatccagtggtgagtatattcagatgagtggtcgt
gctggtcgtcgggggattgatgatcgtgggatctgcatccttatggttgatgagaagctt
gaaccttctacagctaaattcatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtctgaagacggtcatcctgaaaat
ctgctccgtaactcattttatcaatttcaagcagatcgtgcacttcctgatcttgagaaa
caagcaaaaattcttgaagaggagagaaactcaattgtgattgaagaagaagacagcctt
gagagatattataatctgctagaacaatataagagcttgaaaagggatgtacgtggcatt
gttttttctccaaaatattgcttacctttcctgcagcctggtaggcttgtatgcattgag
tgtacaaaggttgatgttgatgttccaaccttctccatcaatgaagaggtcacatgggga
gtaataattaattttgaaagggtgaaagggctttctgaagatgatgcaaacaaaaaaccg
gaggacgcgaactatacagtagatgtactcacgagatgtatagtgcggaaggatgaggtt
ggtagaaagacaattaaaatcgtccgattgaaggatgctggggaaccagctgttgtctct
cttcctttatcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatctt
ttgccttcagaagttcgagaaaatacactaaagaaggtttctgaagttctcaatagattt
tcaaaagagggcatgcctctcttacacccagaagatgacatgaaggttcaaattagctca
tacaggaaggcttcaagtaggatagaggcattggagaatctgtttgaggagtatgagctc
gcgaagtctccgcttataaaagagaagcttaaggttttgcataagaagaaagaacttact
ggcaaaatcaaatcaatcaagagagcagtgcgtacttcaactgccttagctttcaaagat
gaacttaaatcaaggaaaagagctcttagaagactcggatatatcagggatgacgttgtg
gagcagaaagggaaggtagccagcgaaatcagcagcgcagatgagttgaccttgactgaa
ctgatgttgaatgggaccttcagaaatatcaaagtggaggagatggtctctgttctctct
tgttttgtgtggcaagaaaagcttcaggatgctcaaaagcccagggaagagcttggattg
ctctttgcacaattacaggatacagctcggcaggtggcaaaagttcagctcgagagcaag
gtccaaatagatgttgagaactttgtgagttctttccgacctgatatcatggaggccatc
tatgcttgggctaaaggatctaagttttatgagattatggaaatgactccggtgtttgaa
ggcagtttaatcagggctattaggagattggaggaagttcttcagcagctaatacaagct
gcaaaatccattggggatattgtgcttgaggcaaaatttgaagaggctgttgctaagatc
aaaagggatattgtctttgctgcatctctgtatttgtag
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