Solanum dulcamara (climbing nightshade): 129885996
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Entry
129885996 CDS
T09577
Name
(RefSeq) nuclear pore complex protein NUP160
KO
K14303
nuclear pore complex protein Nup160
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129885996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129885996
03036 Chromosome and associated proteins [BR:
sdul03036
]
129885996
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129885996
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
129885996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
NUP160_helical
Nucleoporin_N
PSF3_N
Motif
Other DBs
NCBI-GeneID:
129885996
NCBI-ProteinID:
XP_055816473
LinkDB
All DBs
Position
4:8559180..8583128
Genome browser
AA seq
1490 aa
AA seq
DB search
MGSRSCLVGMEVPITGSDSVKFVQLSLPSSTSNSASSATPLTAVAHLTRDVGSCSIIGNP
PVYFTWKICRSQPNVLEIMEFCGHKEFPKTGLQIVFPQALLPFAVICKNEMAFSSVKPYS
LHAMTVSGVAYLIKLENISNYVSSSNLQSDDFVDFNTLTHPHQGAATAVAGIAELMVVGR
SDGSVGCFQLGILDQRAPGFVQELREDSGLGRLWGVLSRGRSNAAVQDLVISEFHQKKLL
FVLHSDGSLRVWDLPNRSRIFSHSLSVSPSAGSTFARICVGNDHSNPDAFPMAVLQKDDS
EVGAAVISLYSLYFSTGDRVSLLLDPSTKSISLEEGDLIDIKLTPNKLWILRENGLVMKE
LFCQNRKEELAYRYSLQDAFVAEQLFQGSENSSDDLLWLSHTVLSSSKDQISPFVSSVFL
RRLLLPGVYHRNVLRVTLQDFSKHFTDSEFDSLTVDGLKNEILSVIQHEVGADSPISVLQ
SWKTFCTCYFNNWRRTNVACGLLIDSATQAVGVIRKSSVSMCRSLEDIELLVFGSSDEHG
NIICSRFDSSDSDLEREILLEILQCVNTLSQQLSKAAPAIFFESLLRTPNLSSEEVIPRL
LKNLGSGYSSSMAALHVSELGTDVALNKEISYHKRLRKFSVDMFLSLHNLCSRAIRWRSV
LRVIESYLKFLVPRKYEHNLDSEGLFTVNTALTVQATSQVAKVMFESALDVHLLLSYMVN
SSSQIGMSEDEVSRVKLELIPMIQEVITEWHIINFFSTTPSESPLLEDFSSQLSSLQLDG
NVDRRSWNEKLGKSEFTLAFILLLGGHSGPSFGHLPDPNSLSKSVQEFASWIIWGRTGAE
PSVFFSHSIDLALMLLRHGQYDAVEYVLGLVDTYSRKEKICQSLQSDGGEWSTLLHLLGC
CFIAQSQRGLHGTKKDRKISEAVRCFFRAASVEGAAKALQNLPNEAGWLHLGFSQQVSPA
AWKLHYYQWAMQIFEQHNMREAACQFTLAALEQVDEALGSGVLDESATAVKGRLWANVFK
FTLDLNYYYDAYCAIISNPDEESKTICLRRFIIVLYERGAVKILCDGQLPFIGLSEKVER
ELAWKAERSDVSAKPNPFKLLYAFAMQRHNWRRAASYIYLYSAQLRIHGAMRDPHRRSFI
LQERLNGLSAAINALQLVHPAYAWIDSPLEETYSNMYPSKKARITMEEESPGNGAQSHRQ
RSYLDVDKLENEFILTSAEYFLSLANISWTFAKIEAAPNDVIDLLVESSLYDMAFTVILK
FWKGSALKRELERVFAAMSLKCCPKKAPSVGNGQRMPSLLLTSSLNEIVVRGSPNVGPPA
QESKGSSHWEALELYLEKYIKFHAKLPVVVADTLLAADSQIELPLWLVQMFKVVPAKSGG
GMAGSESNPASLFRLYIDYGRYTEATNLLLEYFESFASLRPADIIRRKRPFAVWFPYSLI
ERLWCQLQQSIKLGHMVDQSEKLKKLLQGTLMNHLHQLKVDSDDVMSSVS
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtcggtcgtgtttagtaggtatggaggttcccattactggcagcgattccgtc
aagtttgttcaactctccctcccttcttctacttccaattctgcttcttctgcaactccc
cttacagcggtggcccatctcacaagagacgtcggttcttgctccatcattgggaaccct
cccgtctatttcacttggaaaatttgcagaagtcagccaaatgtgctggaaataatggag
ttctgtggtcataaggagttcccaaaaacaggattgcaaattgtattcccacaagcacta
ttgccatttgcagtaatctgcaaaaatgaaatggcattttcttctgtcaaaccgtattcg
cttcatgccatgacagtgtctggggttgcctaccttattaagcttgaaaacatctccaat
tatgtatctagctccaatttgcaatctgatgattttgttgacttcaacactctgactcat
cctcatcaaggagcagcaacagccgtggcaggaatagcagaactgatggtagttggaaga
agtgatggatcggttggatgcttccagcttggcatccttgaccaacgagctccaggcttt
gtgcaggaactgcgtgaagattctggtcttggtcgtttgtggggcgttttgtcaagggga
aggtcaaatgctgcagtgcaggatctagtcatatcggagttccaccaaaaaaagcttcta
tttgtgcttcactctgatgggagtttacgtgtgtgggaccttccaaatcgttccagaatt
ttcagtcattctttaagcgtttcaccatcagcaggatccacttttgcaaggatatgtgtg
ggaaacgaccacagcaatcctgatgcatttcctatggcagtactacaaaaagatgattcg
gaagttggcgcagcagtgatctctttatatagcctttatttcagtaccggggacagagtt
agcttgttactggatccttcgacaaaaagcatctcattggaagagggggacctcattgat
ataaaacttactccaaacaagttgtggatactcagagaaaatggattggtcatgaaggag
ttgttttgtcaaaataggaaagaggaattagcttatcgctattctttacaggatgcattt
gttgctgagcagctgtttcaaggctctgaaaattcttcagatgatctactttggctttct
cacacagttttgtcatcttcaaaggatcagatttctccgtttgtatcttctgttttctta
cgtaggttgctccttccgggtgtttatcatagaaatgttcttcgggtaacattacaagat
tttagcaagcacttcactgattccgaatttgactctttgactgtggacggactgaaaaat
gaaattctgtcagtcattcaacacgaggtgggagctgatagtccaatttcagtacttcag
agctggaaaaccttttgtacctgttatttcaataattggcgcagaacaaatgtagcgtgt
ggtttgcttattgattctgccacacaagctgtgggtgtaattagaaaaagctcagtctcc
atgtgtcgtagtctggaggacatagagcttcttgtttttggatcttctgatgaacatgga
aatataatatgctctaggtttgactcctctgatagtgatcttgaacgggaaattcttttg
gagatactgcagtgtgtcaatactctcagtcaacagttgagcaaagctgctcctgccata
ttttttgagtctcttcttagaacaccaaatttatcatcagaagaagtcattcctcggttg
ctgaaaaatttaggaagtggatatagctcatcaatggcagcgctccatgtatccgaactt
ggaactgatgtagcattgaataaggaaatttcttaccacaaaagactcagaaaattctca
gtagatatgtttttatctctgcacaacttatgcagtagagctatcagatggaggagcgtt
ttgcgtgttattgaaagctatttgaaatttctcgtgcctcgaaaatatgaacataatttg
gattctgaaggactcttcacagtcaacactgcccttacagtgcaggcgacttctcaggtt
gctaaggtgatgtttgaatctgcattggacgtgcatttgcttctaagctacatggttaac
agtagcagtcagattggcatgtcagaggatgaggtttcgagagtaaaacttgagttaatt
ccaatgatccaagaggttattactgagtggcatatcatcaatttcttcagcaccacacca
tctgaatctcctcttcttgaagacttcagcagtcaactttcatctctacagcttgatgga
aatgttgatcgaagatcatggaatgagaaacttggtaaatctgaattcacgttggccttt
attctgttacttggagggcatagtgggccatcttttggacatcttcctgatcccaacagt
ctaagtaaatcagtacaagaatttgctagctggataatatgggggagaacaggagcagaa
ccatctgttttcttcagtcattcgattgatcttgctctgatgttgcttaggcatgggcaa
tatgatgctgttgagtatgtacttggtttggtggatacttattctcgcaaggagaagatt
tgccaaagtcttcagagtgatggtggggagtggtccactctgttgcatcttcttggctgt
tgctttattgcacaaagccaacgtggtttgcatggaacaaagaaagataggaaaatttct
gaagcagtccggtgcttttttagagctgcgtctgtggaaggagctgccaaggctttgcaa
aatttgccaaatgaagcaggatggctacaccttggtttctctcaacaagtctcacctgct
gcttggaagcttcattactatcaatgggcaatgcaaatatttgaacaacataacatgagg
gaggctgcctgccaatttactcttgctgcacttgagcaagttgatgaagctcttggatct
ggtgttcttgatgaatcagcaactgctgtcaagggacgtctctgggcaaatgtcttcaag
ttcactttagatctaaattattactatgatgcgtattgtgcaatcatttcaaatccagat
gaggaaagcaaaaccatttgtctgaggcgatttataattgttttatatgagcgaggagct
gtgaagattctttgtgatggccagctaccatttattggcttgtcagagaaagtggagcga
gagcttgcttggaaggctgagcgttcagatgtttcagccaagccaaacccgttcaagtta
ctctatgcatttgcaatgcagagacataattggcggagagcagcgagctatatttacttg
tattcagcacaattaagaatccatggtgcaatgcgagatccccaccgacgttcctttatt
ctgcaggagaggctgaatgggctttctgctgctatcaatgctctacagctggttcatcct
gcatatgcttggattgattctccacttgaggaaacttattctaatatgtatccaagtaaa
aaggctaggataaccatggaagaagagtctcctggtaatggtgctcagtctcataggcaa
agatcatatttagatgttgataaacttgagaatgagttcattctaacgtcagctgagtat
tttctgtcattggcaaatatctcttggacttttgccaaaattgaggcagccccaaatgat
gtgattgaccttttggttgaatcaagcttgtatgatatggcatttacagtaattctgaaa
ttttggaaagggtcagctttgaagagggaacttgaaagagtttttgcagctatgtcattg
aaatgctgcccaaagaaagccccatcagttgggaatggtcagaggatgccaagtcttctt
ttgacttcatcactgaatgagattgttgtccgtggatcgcctaatgttggtccacctgca
caggaatctaaaggcagtagccattgggaggcacttgagctctatctcgaaaaatacata
aagtttcatgctaaattgcctgttgttgttgctgatactcttcttgctgctgattctcaa
attgagttacctctttggttggttcaaatgttcaaggttgtgccagcaaaaagtggtggg
ggaatggcgggaagtgagtcaaaccctgcttctttgtttcgtctatatattgactatggt
cgttatactgaagcgactaatctgcttctggagtactttgaatctttcgcgtcactgaga
ccggctgatattattcgtcgtaagaggccgtttgcagtttggtttccctattctttgatt
gagcgtttatggtgtcaacttcaacaatctatcaaactaggccacatggttgatcaaagt
gaaaagcttaaaaagttgttacagggcactctcatgaatcatctacatcaacttaaagtg
gattcagatgatgtgatgtcttctgtttcctag
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integrated database retrieval system
