Solanum dulcamara (climbing nightshade): 129886053
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Entry
129886053 CDS
T09577
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sdul01009
]
129886053
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129886053
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
129886053
Protein phosphatases and associated proteins [BR:
sdul01009
]
HAD phosphatases
Fcp/Scp phosphatases
129886053
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
129886053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
129886053
NCBI-ProteinID:
XP_055816542
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All DBs
Position
4:9308120..9314169
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AA seq
664 aa
AA seq
DB search
MIVLRKSSLMAKGEAVAVKDAVHKLQLCLLEGIEDENQLIAAGSLLSRSDYQDVVTERSI
ANMCGYPLCSNSLPSERPRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDE
RSSTLNPAKLHEVLNLFKGLHLHSAEDVKEKGDLGFSKLKIQEKVDVKGGEVSLEEWMGP
SYAIEGYVPQRDRSVNPALLKNINRGSKNKHAPLQNEKNMILNEISFSSTIITQDEYSVS
KFPAQEAQMKTTYKVRDDDVSILGKQVDALQLHSGEETEKKSDKNTRCFKVDKFNSGEVS
SGPSQHDVKNKSVEVLNMSDARRKYASDGAHDKQLPKSSLKSSNSKKMARSVTWADENID
DGIGKKTESSSKTSEYGNQAYGGSGSTDMEEDNDSYRFESAEACAAALSQAASAVASGSD
VPDAVSKAGIVILPPSQELDEAIHQENDEMLDQEPAPLKWPRKPGMPNYDVFESEDSWYD
SPPEDFNMTLSPFATMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGREYPHKIVLSDG
RSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLFLDTMSFVDPLPAFRMKQWQL
IVLLFLDALSVCRIPTLTPYMTGRRTSLPKVLDGAQISTAEYEIMKDLIIPLGRVPQFSM
QSGG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgatagtacttcggaagagttctctaatggcaaagggagaagccgtcgctgttaaagat
gctgtccacaagttgcaactctgtcttcttgaaggcattgaagatgaaaaccaactcatt
gctgctgggtctttgttgtctcggagcgattatcaggatgtagtaactgaacgatcaata
gcaaacatgtgtggttatcctctctgcagcaactctctgccttctgaaaggcctcggaaa
ggacattacagaatatcattgaaggagcataaagtttatgatcttcatgaaacatacatg
tactgttcaacaaattgtgttgtcaatagtggagcatttgctggtagcttgcaagatgag
agaagttctaccctgaatccagcaaagcttcatgaagtcctgaatctatttaagggattg
catttgcattccgcagaggatgtgaaggaaaagggagatctaggattttctaagttgaaa
attcaggaaaaagtggatgtaaagggtggtgaagtttcattggaagagtggatgggtcca
tcttatgcaattgaaggctatgttccacagagagatcgaagtgtgaatccagcactgttg
aaaaacattaatagaggatcaaagaataagcatgccccactccaaaatgagaaaaacatg
atacttaatgagattagtttttccagcactataataactcaagatgagtatagcgtttca
aagtttccagctcaagaagcccaaatgaagacaacgtacaaagttagggatgatgatgtt
tctatactgggaaagcaagttgatgccttgcagttgcattctggagaagaaacagagaaa
aaatcggataagaacacgagatgttttaaggtggataaatttaattctggagaagtgtct
tctggtccttcccaacatgatgtcaagaacaaaagtgttgaggtgctaaatatgtcggat
gccagaagaaaatatgcatcagacggtgcacatgataaacaattacccaaatcttcttta
aaatcctcaaattccaagaaaatggctcggtcagttacttgggctgatgaaaatatagat
gatggcattggcaagaaaacagagagctcatccaaaacatcagagtatgggaaccaagct
tatgggggatcaggctctacagacatggaagaggataatgattcatatcggtttgaatct
gcagaagcctgtgcagcagcactaagccaagcagcaagtgctgttgcctcaggttctgat
gtccctgatgctgtgtccaaagccgggattgtaatattgccaccttcacaagaattggat
gaagcaatacatcaggagaatgatgagatgcttgatcaagaaccagctcctttaaaatgg
ccaagaaaaccagggatgccaaattatgatgtttttgaatcagaggactcttggtatgat
agtccacccgaggattttaatatgactctgtcacctttcgctacaatgtttaattccctc
ttcacgtggatatcatcatcatccttggcatttatatatgggcatgatgaaagcaataat
gaggagtatttgtctatcaatggaagagaatatcctcacaaaattgtgctgtccgatggc
cggtcaactgagatcaagcagactcttgctggctgtcttgctcgagcattgccaggattg
gtagctgaccttaggttgcctgttccaatatcaactttagagcaaggaatggttctcttc
ttagatacaatgtcttttgtggatccactccctgcattccgaatgaagcagtggcaactt
attgtacttctgtttcttgatgctctttctgtatgtaggatacctacactgactccatat
atgacagggcgaagaacttcgcttccaaaggtgcttgatggtgctcagataagcacagca
gaatatgagatcatgaaagatctaatcattccactaggtcgagtgcctcagttctcaatg
caaagtggaggctag
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