Solanum dulcamara (climbing nightshade): 129886116
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Entry
129886116 CDS
T09577
Name
(RefSeq) syntaxin-43-like
KO
K08489
syntaxin 16
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
129886116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129886116
Membrane trafficking [BR:
sdul04131
]
SNARE
Syntaxin (Qa)
Stx-TGN / EE
129886116
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
SNARE
Syntaxin_2
Prominin
FlxA
Use1
HEF_HK
EF-G-binding_N
MCPsignal
OmpH
ZSWIM1-3_C
EFL1
Motif
Other DBs
NCBI-GeneID:
129886116
NCBI-ProteinID:
XP_055816636
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Position
4:complement(10082501..10087534)
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AA seq
324 aa
AA seq
DB search
MASRNRTILFRKYRDALRSVRIPAGSSPSTSSGHGSGPVIELATTSLLNPNRSYAPLSTE
DPGTSSNGPVTVGLPPAWVDLSDEITANVQRVRTKMSELAKAHAKALMPSFGDGKEDQHR
IEALTHEITDLLKRSEKKLQRLSAAGPSEDSNVRKNVQRSLATDLQSLSMELRRKQSTYL
KRLQQQKEGPDGVDLEMNLNGSHSRRDDDDLDDLGFNEHQMAKLKKSEAFTVEREREIQQ
VVESVNDLAQIMKDLSVLVIDQGTIVDRIDHNIQNVASTVEDGLKQLKKAERSQKQGGMV
MCATVLVIMCFIMLVLLILKEIIF
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcagaaatagaacgattttgtttagaaagtatagagatgcgttgagaagtgtt
cggatccctgcgggctcttcgccgtctacgtcatcgggacatggtagtgggccggtgatc
gaattggcaacgacgtctttgcttaatcccaatcgatcttatgctcctctcagtacagaa
gaccccggaacctccagtaatggtccagttacagtaggtctaccgccagcttgggtggac
ttgtcagatgaaatcacagctaatgtgcaacgggtccgcacaaagatgtctgaactagcc
aaagctcatgctaaggctttaatgccatcatttggagatggtaaggaagatcagcatcga
attgaggctcttacccatgaaataactgatcttctcaaaagatcggaaaagaaattacaa
agactttctgcagctgggccttctgaggattcaaatgttaggaaaaatgtacagcgctct
cttgctacagatcttcaaagcctatcaatggagcttcgcagaaaacagtctacttatttg
aagcggcttcagcagcaaaaagagggtccagatggagttgacttggaaatgaacttaaat
gggagccattctagaagggacgatgatgatttggatgacttgggatttaatgagcatcag
atggccaagctaaagaaaagtgaggcattcactgtcgaaagagagagagaaatacagcag
gtggttgaatcagtgaacgaccttgctcaaattatgaaagatctgtcagttctggtgata
gaccagggtactatcgtcgataggatagaccacaatattcaaaatgttgcatcaacagtt
gaggacggccttaaacaactaaagaaggctgaacgaagccagaaacaaggtggaatggtc
atgtgtgcaacagttctagttatcatgtgctttataatgctggtcctcttaattttgaag
gagataatattttga
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