Solanum dulcamara (climbing nightshade): 129886140
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Entry
129886140 CDS
T09577
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129886140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129886140
Spliceosome [BR:
sdul03041
]
Common components
Common spliceosomal components
SR proteins
129886140
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
129886140
NCBI-ProteinID:
XP_055816665
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All DBs
Position
4:10489745..10499308
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AA seq
308 aa
AA seq
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MGRLRPTIYVGNLPGDIREREVEDLFYKYGPIVEIDLKVPPRPPGYAFVEFEDPRDADDA
IRGRDGYDFDGHRLRVELARDGRGSSSYDRYSSYSSGSRGGLSRRSDYRVLVSGLPSSAS
WQDLKDHMRRAGDVCFSQVFRDRDGMRGIVDYTNYDDMRYAIKKLDDSLFRNQFSRAYIR
VDKYDKRHSYSRSPSPYHSRSRSYSRSRSPRRSYSSQSRSLSPRGKYYRRSVSVSPSGSF
SPARSLSRSLSRSRSPLSPPPRWRHARSPRRSRSRSLSYSRSSPSDLWRKTAIMLRGNWQ
PGGANRIF
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtctaaggccgactatttacgtcggaaatcttcctggtgatattcgggagaga
gaagtagaagatttgttttacaagtatgggcccattgtggaaattgatctgaaagttcct
cctagaccacctggttatgcgtttgtagagttcgaagatcctcgggatgctgatgacgcc
atccgtgggcgtgatggctatgattttgatgggcatcgcttgcgagttgaacttgcacgt
gatgggcgaggatcatcatcatatgatcgctacagtagttacagtagtgggagtcgtggt
ggactttctaggcgctctgactatcgcgtactggtctctggactaccatcttctgcttca
tggcaagacttgaaggatcacatgcgaagagctggagatgtctgcttctctcaagttttc
cgagatcgtgatggtatgagagggattgtggactataccaactatgatgatatgagatat
gcgataaagaaacttgatgactctctgtttcgcaatcaattctctcgagcatatatcagg
gtggacaagtatgataagaggcatagctattcaaggagtccaagtccatatcattcaaga
agcagaagttactcaagaagcaggagtcctcgacgaagctatagcagccagagcagaagt
ttatctcctaggggtaaatactatcgtcgctctgtgtctgtctcaccctcagggtctttt
tcccctgctcgctctctttcaagatctctatcaagatccagatctccactttcaccaccg
cctcgttggaggcacgcgaggagcccgaggaggagcaggagcaggagtctatcctattct
cgctcttcgccatcagatttgtggaggaaaactgcgataatgttgcgaggaaactggcag
ccgggtggtgccaacaggatattttga
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