Solanum dulcamara (climbing nightshade): 129886146
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Entry
129886146 CDS
T09577
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129886146
09123 Folding, sorting and degradation
03018 RNA degradation
129886146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129886146
03041 Spliceosome [BR:
sdul03041
]
129886146
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129886146
mRNA degradation factors
5'-3' decay
Lsm complex
129886146
Spliceosome [BR:
sdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129886146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
129886146
NCBI-ProteinID:
XP_055816674
LinkDB
All DBs
Position
4:complement(10549675..10555074)
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGGRGRGRGGRDEGAAGRQAKGIGRGM
EDAGAKGRGKGGPGAKSGGKGGGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctctttgctcaagactgcacagggtcatcccatgttagtggagctaaaa
aatggagagacttataacggtcatttggtgaattgtgatacttggatgaatatccatctt
cgtgaagttatctgtacgtcaaaggatggagatagattttggagaatgcccgaatgttat
attcgtggcaataccataaagtatcttagagttcctgacgaggtaattgataaagttcaa
gaagaaacaaaaagccgtggagatagaaaaccacctggtgtaggtggacgaggaagggga
agaggaggtagggatgaaggtgctgctggaagacaggcgaaaggtattgggcgtggaatg
gaagatgcgggtgccaaaggccgaggcaaaggaggacctggtgccaagtctggtggaaaa
ggtggaggccgtggacgtggctaa
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