Solanum dulcamara (climbing nightshade): 129886348
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Entry
129886348 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129886348
KO
K10891
fanconi anemia group D2 protein
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
129886348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129886348
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FANCD2-I complex
129886348
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FancD2
FANCI_S2
FANCI_S1
FrvR_4th
Motif
Other DBs
NCBI-GeneID:
129886348
NCBI-ProteinID:
XP_055816974
LinkDB
All DBs
Position
4:12908979..12927193
Genome browser
AA seq
1501 aa
AA seq
DB search
MVLLQNKQIGSRKRPAKLKTGFVTPFAPPTKIPKSAVANEENVPQIASELEAPKTRQSQT
VSSTEKMISVLADAGCTLINPSGPPCLPSDLHKLRNQLHSLFSSDTSLKSEFLLSLSSYV
NSPSNLRRILSPSKRDGLGSVRSDSLARVLLLVPSVQSDIQNLLLEKLPEYFDVDPAGNI
GGRSSSLCLEEDIARLILNQFRWLDFLVDSEAFTEKLFQVLSICPVHLKKEIIGSLPEII
GEKNNKTVVDSLQEMLQEDSSIIVPMLDCFSNLHLDDMLQEQVITVVLSCIRTIDAEHMA
YLLRFLLLLATPINTRRIISHIRQQLKLVGASNVWTTQQSKMKGKSVVNNAEASILDALR
TSLRFNKVICQETLNELKSLEKVQDHKVIDIWLLTLIYMNNEPLQKIVEKLLKKKILEGC
IVETMFDQCIYGNKDLTRDYLPTLLSISEYLLACKEDKARKFGMHMYTILFKELVDSYSR
QEVLGALITHVGSGISHEVSSAMDVMVLLASKYSQELIPLSSHITGILDYLEAFSIENLH
KVYEAFSLLAFSAEVSTGPFGSPISNELLVIVRKQLSHPDLIYKKMGLIGTLKIVFYLGD
AKTTKHLPSSQSNYEEALELLETSMNSCKQLPLPLIMFYDELALTLKKKALHPAIVEWTS
KHVGDFESKFLCDLDGGELMAKELYCGLEGDLWMNLDGDISPICLNILPLVSSSLRAASS
LQILPANFVLLSSIEGLANQGSLAGIDALLGCPIHLPSSKFFREPLWGSLSGKQKQIMIL
SLYYAANWLRELLNAFCTQAVDECNAVSQATREEITLKLFKRLRNLVFLESLLNSSLKQC
SFSLPELLPHLESLSLNQLDHSKDQEMKNGHGNGNLGLSQKKKEKKNSQASLTDGKFRQP
TIMDVLRKAGAVPSQEPSTGPSGTCSKGSAPEPSGNQPCNINMSANVDVSTAVEHVEAQR
HKFRPLLLDCFAILAFQKTQDSCCADPDSELPLCLYILRDLNRKLDYFSPRRHKLVRRMS
VLHAFGEMKVIEFISKIQPLFPSLRRHLDSAVSGVREDTDTCADHWRTHSAFAGNPDIPN
MTSSRPSVSRSVIKETLQCFGKMLNIPNVQRDRSILFDLLEAFQPISISDCFFQGMQLIP
SPGDIGYLYAGAYSFVGNIFDAACAVSFALASEVLLSLESVLVSIRTILDNDLNDIGKDI
LTGFSKELFSVLSKKLGTFAYKLLMQKCDSVNDIEGGQKVKAEVIQKLLQIYLENCQSTS
DSLSELACSVLPQFSSRRSAVEDGCCFPTLCPATFCVWYRVLHEENLAMINRLVKEISFL
DKARGGGEVEDVKCLLKKLLQSVNVVVSLVNLCRTHDKVNIRAIAVKFGGKFVDSFLKAF
GFLQGQFELHREQIVQMVRELQTATRTIQTLCSDAKGMKQTAITSKIPITKRSMERFLFR
VKELLHSTSSGCTFWMGNLKHKNLMGDVVSSQAYVDDQNDNMDNFSTENMVIDEPTDIAG
E
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atggttcttctccagaacaagcaaatcggttctcgtaaacgtccggcgaaactgaaaact
ggattcgttactccgtttgctccccccaccaaaattcccaaatccgctgttgcaaacgag
gaaaatgttccacaaatagcttcggaattggaagcgccaaagacaaggcagtcgcaaact
gtaagttcgactgagaaaatgatttcagtactagcggatgccggttgcacactgatcaac
ccctcgggcccgccctgtctaccatctgatctacataagcttcggaaccaactccacagt
ctcttctcatccgatacctctctaaagtctgagttccttctgagtctctcatcttatgtt
aattctcccagtaaccttcggcgcattttatcaccttcaaaacgggatggacttggatca
gtacgaagtgacagcctggcaagagtactgctactggttccttcagtccagtcagacatt
caaaacttgctgcttgaaaagcttcctgagtattttgatgtggaccctgctggaaatatt
ggagggaggtcatcctctttatgtcttgaagaggacatagcaaggttgattctgaaccag
ttccggtggcttgacttccttgtagattcagaagcatttactgaaaaactgtttcaagtg
ttatctatttgcccggttcatttgaagaaggagataattgggtccttgcccgagattatt
ggggagaaaaacaacaaaactgtcgtagattcgcttcaggagatgcttcaagaggattct
tccattatcgttcccatgcttgattgtttctctaacctccatttggatgatatgttacaa
gaacaggtcattacagtggtgttatcttgtatccggaccattgatgcggagcatatggcc
tacctattgagattcttactgcttttggctacgccaatcaacactcgtaggattatttca
cacatccgacagcaactcaaacttgttggagcatcgaatgtttggaccacacagcagagt
aagatgaagggaaagtcagttgtcaacaatgcagaagcttcaatacttgatgccttgcga
acaagtcttcgatttaataaagtaatttgccaagagacattgaatgaactgaaaagccta
gagaaagttcaggatcataaggtcatagacatatggttgctgacacttatatacatgaac
aacgagcctttacaaaagattgttgagaagttactgaagaagaaaattcttgagggctgt
attgtggaaactatgtttgatcaatgtatttatgggaataaggatttgactcgggattat
cttcctaccctcctttccatttctgagtacttactggcttgcaaagaagataaagcccgg
aaattcggcatgcacatgtacacaattctgttcaaagagcttgtggatagttattcaaga
caggaagtccttggagcattaattactcatgtgggctctgggataagtcatgaagtgagt
tctgctatggatgtgatggtcctcttagcctcaaagtactcacaggagttgattccactt
tcttctcatataactggcatcctagattacttggaggcatttagcattgaaaatctgcat
aaggtgtatgaagccttcagtcttctggcattttctgctgaagtgagtacagggcccttt
ggatctcctatttctaatgagctactagtgattgtgagaaagcagctgagtcatcctgat
cttatttataagaagatgggcttaataggaactcttaagatagtattctaccttggggat
gcaaaaactacgaagcatcttccatcatcgcagtcaaattacgaggaagctttggagctc
ttggaaacatctatgaactcttgcaagcagttgccacttccattaattatgttttatgat
gaactggctttaacattgaagaaaaaagcacttcatccagccatagtggaatggacaagc
aaacatgttggggactttgaatcaaagtttttgtgtgaccttgatggtggggagcttatg
gccaaagagttatattgtggtttggaaggggatttatggatgaaccttgacggagacata
tctcctatatgtctcaatatcttgccactcgtatcctcttccttgcgggctgcttcatca
ctgcaaattcttcctgcaaactttgttttgctatcttcaattgaggggttggcaaatcaa
ggatcccttgcaggaattgatgcacttcttggctgccctatacaccttccttcctctaag
ttcttccgggaaccgctttggggctctttaagtggaaaacaaaagcaaatcatgattcta
tcattgtactatgctgccaattggctgcgggaactgctcaatgccttttgtactcaagct
gtcgatgagtgtaatgcagtcagtcaagcaacaagagaggagataactcttaaactattt
aagcggttgaggaaccttgtatttctggagagcttgctaaacagttccctcaaacagtgc
tctttttccttacctgaactcctacctcatctggagtccttgtcgctgaaccaacttgat
catagtaaagatcaggagatgaagaatggtcatggtaatggtaatcttggtctatcacaa
aagaagaaagagaagaagaacagccaagcatcacttactgatggaaaatttaggcagcca
accatcatggatgttttgaggaaagcaggtgcagttccaagccaggaaccaagcactggt
ccttctggaacgtgttctaaaggtagtgcgcctgagccatcagggaatcaaccatgtaat
attaatatgtcagcgaatgtagatgtttctactgctgtggagcatgtcgaagcacaaagg
cacaaattcaggcctcttttgctggattgctttgctatcttagcttttcagaagactcag
gattcctgctgtgcagatccagattctgagttgcccctttgtctatatattctgagggat
ctaaacagaaagctggactacttcagtccacgaaggcataaattggttagacgcatgagt
gttcttcatgcttttggtgagatgaaagtaatagagttcataagcaaaattcagccacta
tttccttcccttagaaggcatttggattctgctgtgtctggtgttagagaagatacagac
acatgcgcagatcattggagaactcattctgcctttgctggaaatcctgatatacccaac
atgacaagctctagaccatcagtttctagatctgttattaaagagacacttcaatgcttt
ggcaagatgttaaacattccgaatgttcagagagacaggtcaatactttttgatcttctg
gaggcattccagccaatcagcatttcagactgctttttccaaggcatgcaattgattcca
tcaccaggagatataggttatttatatgctggtgcatattcatttgttgggaatatcttt
gatgcagcatgtgctgtctcatttgctttggcttccgaagtattgttaagcttggaatca
gtgcttgtgtctatccggacgatcctagataatgatctcaatgatattggaaaagatatt
ctcacaggtttttcaaaagagttattttctgttttgtccaagaagctgggaacttttgct
tacaaactcttgatgcaaaagtgtgatagtgttaatgacattgaaggcggtcagaaagtc
aaagcagaggtcattcaaaagcttttacaaatttacttggaaaattgccagtctacttct
gattccctaagtgagctggcctgctctgttttgccccagttttcatcacgcagatcagca
gtggaggatggctgttgttttcctactctctgtcctgcaacattttgcgtttggtaccga
gtactgcatgaagagaaccttgccatgattaaccgcttggtaaaggaaatttcatttctg
gataaagccaggggtggtggtgaagtggaagatgtcaaatgccttctgaagaaactacta
caatctgttaatgtggtcgtatctttagtcaatttgtgcaggacccatgataaggtcaac
atccgtgcaattgctgtcaagtttggtgggaagtttgttgactctttcctcaaagctttt
ggcttcttgcaggggcaatttgaattgcatcgtgagcaaatagttcagatggttagagag
cttcagacggcaacgagaactatccagacgctttgttcagacgcaaagggcatgaagcaa
acagcaataaccagcaaaatccccatcaccaagagatctatggagcggttcttatttcgt
gttaaggaacttcttcactcaacgtcaagtggatgcactttttggatgggcaatctaaag
cataaaaatttgatgggggatgtagttagctcccaagcatatgtagatgatcaaaatgac
aatatggacaatttttcaacagaaaatatggttatagatgaacccacagatattgctggt
gaatga
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