Solanum dulcamara (climbing nightshade): 129886437
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Entry
129886437 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129886437 isoform X1
KO
K24155
rabconnectin-3a
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
129886437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129886437
Membrane trafficking [BR:
sdul04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
129886437
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
129886437
RAVE complex
129886437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_THOC3
WDR55
Beta-prop_WDR3_1st
Beta-prop_EML
Beta-prop_WDR5
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
WD40_CDC20-Fz
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_C
WD40_Gbeta
Beta-prop_Aladin
Motif
Other DBs
NCBI-GeneID:
129886437
NCBI-ProteinID:
XP_055817096
LinkDB
All DBs
Position
4:13990625..14017329
Genome browser
AA seq
2515 aa
AA seq
DB search
MESHKISCCTTVDDVVSKLPLQLIKSEIIPPVPNRSKYPSEFEPAIDWQPNFAGYSWIAY
GASSLLVIRQFPNPLSQTETVIGTVFRQVLELSIDGTGTVSAVAWSPVTPSSGDLAAALD
NCIGLFSYNSDASHSSFCWSQTSTLVQSTKVDSITWTGSGDGIISGGIELILWRKTERSW
EIAWRFKPELPQTLISATWSIEGPFAAAPPYGLHFEGSGSHIHAGNKCVLVCQRDADSRH
LEAMLPHPLPVSMIQWRPSTVTQSTRDGRYSRRLVLLTCCLDGAIRLWTEIDDGRVRKVG
KDGNEHKMTKSSFRVVAVVEVNQALNGRLGLDVYVRWAKDISGIITVNGEAVSYASSDEH
QHGNAGRCEWLVAVGPQTTLTFWAIHCLDDFSPARAPRVTLWKRKELNSPKEMPRGLLLN
KVFIMRNQVFGPPTVCSFINLLPSNYLAWMQFYSTKFPSGANVSSELISTEDSTPTKCQT
EGLLSLCATGLSNTDSHSNKILQVAVHPCLSELEIASSLDTDGKLLFWLFSSASNTILAL
PTLSPSWKLFGKSATALPQPKYTSLSWAPTLLSEERILVIGHADGIDFLVVKAVKTEELE
MVCHKICTIPLTAGSQEQGPDSVFSIPLPSTCNKTFISNSFLLLAVWKKGFQALSWKIYL
HHYDLSGSCCGCSFDSNNTFQNNIWKFESSYSGKAYIVSVEPCSSVFPDPHHRDKISSYA
VICPTNSGFSEEIFANNLCSNYFAYHMVTGCVDGSLHLWRSVPALSSNSQWDLVGMVAMH
QSPISAMSVSFCGRKIATISKEGPLSTSTTIHIWECVRVEGAGSFILEDTLYFDADVVAS
NWLTIGNGQFLLGVCSRDKLNVYAQKRCGGQCNLELETSLEENIWVCIAASYTNPTIQDF
FWGPKAMIVVVHDQYISVFSKFSYFMDKKLLPQLGGEFCEESSACHYGSNKVPVFYGHEN
CDNARCQSDFQLKMEVVNETSLFSSMTKSKEGFTSVKNGIWSILEIAELVGGSLPLVHPE
AFLVNLLSGNWKRSYVALQCLSKHVTSTKLSTKICCLRAFSDLIFPISLSNYLEGNVLLS
SGEKSFQWGGPSDSSSWGYASSDNAFSISSARSEITDFIEAVDKLQNLATISATEIMQMR
AAVHLLDEVSNMQSTSAYNSLDGPGRRFWVSVRFQQLYFVQRFGRLPSEGELVVYSGLIG
WAFHSDCQDNLFDSLLSKQPTWQEMRDMGVGLWYTSVAQLRLKMEKLARQQYLKNKDPKA
CALLYIALNRLQVLAGLFKISKDEKDKPLVAFLSRNFQEDKNKAAALKNAFVLLGKHQLE
LAIAFFLLGGDTTSAVTVCAKNLGDEQLALVICRLVEGYGGKLELNLISKFLLPSSLAKG
DYWLASVLEWMLGKYSQAYLRMLAYPMGSLNSKWIVSSRQPAFIDPNIGDFCLMLAAKTT
MKNAIGEQNAASLSRWAILMRATALSRCGLPLEALECLSSSVSATGDSNRRNVPDNMDSG
CLHEMLSAMLNENSSNWLSLDVAFQIDSHMRSDLSMQYMSKMLRRHPSWVDNHTTCLQEH
MYTVSENQEYKLLLEAFQDELMTTISSFQLKFSLSPLHCIYSICLSFCNHGLAYVGCHLL
RDYINRYLSSEQGGGLDGCSLYPCLPDLFLEVSAELFYIFARYIIMCSMDCFYLKSFTFR
SNRADENIYCAILELYKRRLCWSFWCLRAMMQYSSVSCTENVVGTHFTVLDLSEYLLLFA
SAWVQRNFSDLILIMKPLLMAKTSDETDIKDIQKLLRESLEMMASDLPIHAAGSSVQNKN
QMPQAQFGDLILSAPQERWHVMVAFFWGYVSSLLKHKLDLLCPELKESGLFLPPGGHPSI
STSSIFVNANNVSTHNGMVPGLLANILKVTCAHISSYCVNQFASVLLESIDPGATTLFCF
EDHQSHHKAPDTKLSPSNSDLDKVTGEDELSVFEVLWDFCSELKKVNQDFVLQDQKCLQH
TLQKSFKGWSEMYPSIVRECEVDETYDREERLGSPSSTAGSPLACLSPNNHPFQSFGGKD
THHAKKVLPFRSPIEIYKRNGELLEALCINSIDQHEAALASNRKGLLFFKWEDGLPCGNK
ADNVWAEADWPHNGWAGSESTPVPTCVSPGVGLGSKKGTHLGLGGATVGTGFMARPTFGL
PGYANMGGSSLGWGVQEDFDEFLDPPATVENVRTRSFSTHPSRPFFLVGSSNTHIYLWEF
GKDRATATYGVLPAANVPPPYALASVSAVKFDHCGHRFVSAASDGTVCTWQLEVGGRSNV
QPTESSLCFNNYTSDVTYVTSSGSIIAAAGYSSSGVNVVIWDTLAPPATSRASIMCHEGG
ARALAVFDNDLGSGSISPLIVTGGKGGDVGLHDFRYIATGKTKRQKHTEIGDHGVNSMVD
TQKKTGDQNRNGMLWYIQKAHAGSVTKISTIPHTSFFLTGSKDGDVKLWDAKNAKLVFHW
PKLHERHTFLQPSSRGFGGVVQAAVTDIQIVSHGFLSCGGDGAVKFVMLNDHLSL
NT seq
7548 nt
NT seq
+upstream
nt +downstream
nt
atggagagtcacaaaatcagttgctgtaccacagtggacgacgtcgtttcgaagttacca
cttcagctgatcaaatcggagatcatccctccggtaccgaaccgatcaaaatatccttcc
gaattcgagccagcaattgactggcagccgaacttcgctggctactcatggatcgcctat
ggtgcctcgtctctcctcgtcatacgtcaattccccaaccctctatcacaaaccgagact
gtaatcggcacagtttttcggcaggttctcgagctgtcaatcgatggcactggcactgtt
tccgccgtcgcttggtccccggtaacgccttcttctggagacctcgctgctgcactcgat
aactgcattggattgttctcttacaactctgacgcttctcatagttctttttgttggagc
cagacatcaacgctagtacaatccacaaaggtagactcaatcacatggacggggtcagga
gatgggataatttcaggtggcattgaattgatcttatggagaaagacagagaggtcatgg
gaaatagcttggagatttaaaccagaactgcctcagactctaatttctgctacttggtca
attgaagggccttttgctgctgcacctccatatggattgcactttgaaggttcgggttcc
catatccatgctggaaacaaatgtgttttggtatgccaaagagatgctgattccagacat
ttagaagctatgctgccacacccattacctgtttctatgattcagtggagaccatctaca
gttacacagtcaactagagatggcagatattcaaggaggttggtgttattaacatgctgt
ctagatggagctataaggctctggactgagattgatgatgggagggttagaaaagttggc
aaggatggtaatgaacacaaaatgactaaatcctcttttcgtgttgtcgctgtagttgag
gtaaaccaagcattaaatggaaggctagggttggatgtatatgtaagatgggcaaaagat
attagtggtataataactgttaatggggaagctgtgtcttatgcttcatcagatgaacat
caacatggcaatgctggtaggtgcgaatggttagttgctgtaggtccccaaacaacactg
actttttgggctattcattgtctcgatgatttttctcccgcaagagccccaagggtaacg
ttgtggaaaagaaaagaattgaacagtcctaaagagatgccaaggggattgctcttaaat
aaagtctttatcatgagaaatcaggtctttggtccaccaacggtatgttcttttattaat
ctattaccaagtaactatctagcctggatgcaattttattccacaaaattccccagcggt
gcaaatgtatcttcagaactgattagcacagaagattcaactccaactaaatgtcagact
gaaggtttattatcattatgtgcaacgggactttcaaatacggacagtcacagcaataaa
attctgcaggtagcagttcatccttgtttgtctgagttggaaattgcttcctctctggac
actgatggaaagctccttttttggttgttttcttctgcttcaaatactattttggccctc
ccaactttgagtccatcttggaaactttttgggaaaagtgctactgcactccctcaaccc
aagtatacaagcttaagctgggctcctactctgttaagtgaagaacgaattctcgtgatt
gggcatgcagatggaatagatttcttagtagttaaggctgtgaaaactgaggaattggaa
atggtttgtcacaaaatatgtactataccacttactgctggaagtcaagaacaggggccg
gacagcgtcttctcaattcctttgccttccacttgtaacaaaaccttcatttccaatagc
tttttgctgttagctgtgtggaagaaaggctttcaggctttatcgtggaaaatttacctt
catcactatgatttgtctggaagttgctgtgggtgcagttttgacagtaataacaccttc
cagaacaatatatggaaatttgagagtagttattctggcaaggcatacattgtctctgtt
gaaccttgttcatcagtttttccagaccctcatcaccgtgataaaatttcaagttatgct
gtgatctgtcccacaaactctggattcagtgaagagatttttgctaataatttgtgtagc
aattactttgcttatcatatggttactggttgtgttgatggtagtttgcatttatggaga
agcgtgcctgctctgagctcgaattctcagtgggatcttgttggtatggttgctatgcat
caaagccctatttcggctatgtctgtaagtttctgtggccgaaagattgcaactatctcg
aaagaaggtccattaagtacttctactactattcatatctgggaatgtgtgcgtgttgag
ggtgctggcagctttatactagaagacactttgtattttgatgcagatgttgtcgcttca
aattggttgacgattgggaatggccagtttttactaggtgtttgctcaagagataagttg
aatgtgtatgctcaaaagagatgtggaggtcagtgcaatttggaactggaaacatcatta
gaagaaaacatttgggtgtgtattgcagcaagttatactaatccaaccattcaggacttc
ttttggggacccaaagccatgatagtggttgttcacgatcaatacatttctgtctttagc
aagttctcatattttatggacaagaaacttctgccgcagcttggtggagaattttgcgag
gagagttccgcctgtcactatggttctaataaagtgccagtattctatggtcatgaaaat
tgtgacaatgcacggtgtcagtctgatttccagttgaaaatggaagtggtgaatgagact
tcactgtttagtagtatgacaaaatctaaagaaggctttacgtctgttaaaaatgggatt
tggagcattttagagatagcagaacttgtaggaggatctcttcctcttgttcacccagag
gcatttcttgttaacttactttcaggtaattggaaacgttcatatgtagctctgcagtgc
ctcagtaaacatgtaacttccacaaagttatccacgaaaatatgctgccttcgtgccttc
agtgatttaatatttcccatttcgttgtcaaactatctggaaggaaatgttttgttaagt
tctggtgagaagtcatttcaatggggtggaccttcagattcctcaagctggggatatgct
tcatctgataatgcgttctctatctcttcagcaagatctgaaataactgactttatagaa
gccgttgataaacttcagaatttggcaactatatctgccactgaaataatgcaaatgcgt
gctgctgttcatcttctcgatgaagttagcaatatgcagtccacttctgcttataatagc
cttgatggacctggtcgtaggttttgggtttcagtgaggtttcaacagctatattttgtt
caaagatttggcagactgccatcagaaggtgagctggttgtgtactcgggactaattgga
tgggctttccactctgactgccaagataatttgtttgattctctattatctaagcaaccg
acttggcaagaaatgcgtgatatgggtgttggactatggtatacaagtgtagcacaactg
cgactgaagatggaaaagctggcaagacaacaatatttaaagaataaagatcccaaggca
tgtgcacttctttatattgctttaaatagacttcaagtattggcgggcctttttaagatt
agcaaagatgagaaagataagccattggtggcatttctttcacgcaattttcaggaagat
aaaaataaggctgctgctctaaagaatgccttcgtcttactggggaaacatcagttggag
ctcgcgattgctttctttttgcttggaggagatacaacatctgctgtcactgtttgtgca
aagaatctcggggatgagcagcttgctcttgttatttgccgtcttgttgaaggttacggt
ggaaaattagagcttaatcttatttcgaaattcctcctcccgtcttctcttgccaaaggt
gactactggcttgcaagtgttctggagtggatgttggggaagtattcacaggcttatctt
agaatgcttgcttacccaatggggtctttgaatagtaaatggatagtctcatcccgtcaa
cctgccttcatagatccaaacattggagacttttgcctaatgttagcagccaagactacc
atgaagaatgctattggggagcaaaatgctgcttccttgagtagatgggcgatcttgatg
agggccactgccttaagcagatgcggactgcctcttgaagctttggaatgcctttcatct
tctgtgagcgccactggtgattcaaatcgacgaaatgtgcctgataatatggactctgga
tgcctgcatgaaatgctgagtgcaatgctaaatgaaaattcatcaaattggctatcattg
gatgtggcttttcagatagattcacatatgagatcagatttgtctatgcaatacatgtct
aagatgttaagaagacatccaagttgggtagacaatcatacgacatgtcttcaggagcac
atgtatactgtatctgagaatcaagaatacaagcttttacttgaagcttttcaagatgaa
ttgatgactacaatttcatcctttcaactgaagttctccttaagtcctctgcattgtatt
tactcgatctgtttgtcattttgcaaccacggtttggcgtatgtaggatgccacttgttg
cgagactacataaatagatatctgtcaagtgagcaagggggtggacttgatggttgctcg
ttgtatccttgcctcccagatctatttcttgaagtatctgcagaactattttatattttt
gcaagatacatcattatgtgtagcatggactgtttctacttgaagtcattcacctttagg
agtaatagagctgatgaaaacatctattgtgccattctagagctgtacaagaggagatta
tgttggtcattctggtgtcttagagccatgatgcagtactcttctgtttcttgtacagaa
aatgttgtagggacacattttactgtccttgatttgtcagagtatcttttactgtttgca
tctgcttgggtacaaaggaattttagtgatcttatcttgattatgaaacctctcttgatg
gcaaaaacttcagatgagacagacataaaggacatacagaaacttcttcgtgagtctctc
gaaatgatggcttctgatttacctattcatgctgctggatcttctgttcagaacaagaat
caaatgccacaagcacaatttggggatctcatattgtcagctccgcaagagagatggcat
gtcatggttgctttcttttggggatatgtatctagtcttttaaaacacaagttagatctg
ttatgtccggaacttaaagaaagtggtttgtttctacctccaggcggacatcccagtata
tctacttcttcaattttcgtaaatgccaacaatgtctctacccataatgggatggttcca
ggacttctggctaacatactaaaggttacatgcgctcacatctcttcttattgtgtgaat
cagtttgcatctgtcctgctggagagcatagatccaggtgcaactacacttttctgtttt
gaagatcatcagtcccatcataaagccccagatactaaacttagtcctagcaatagtgat
ctagataaggtgactggtgaagatgaattatcagtgtttgaggtgttatgggatttttgt
tctgagcttaagaaagttaatcaggattttgtgcttcaagaccagaaatgtttacagcat
accttgcaaaagtcctttaaaggatggagtgaaatgtaccccagcattgtgagggagtgt
gaagttgacgaaacttatgacagagaagaaaggcttggtagtccaagtagcacagctgga
tctcctcttgcttgtttgtcgccaaataatcatccttttcaaagttttgggggaaaagat
actcaccatgcaaaaaaggttttgccattccgtagtccgatagagatatataaaagaaat
ggagagcttttggaggctttgtgcatcaactccattgatcaacatgaagctgctcttgct
agcaatcggaagggtttattattcttcaaatgggaagatggtcttccttgtggaaataaa
gctgacaatgtctgggcagaggctgactggccacataatggttgggcgggatccgagtct
acaccagttcccacttgcgtctctcctggagtgggtctagggagtaagaagggtacacac
ctcgggttaggtggagcaactgttggcacaggttttatggcaagacctacatttgggctt
ccaggttatgccaatatgggtggatcgagtcttggctggggggttcaagaggattttgat
gagtttcttgaccctcctgccacagtagaaaatgttcggacaaggtcattctcgactcac
ccttcaaggccttttttcttggttggatcaagcaatacacacatatatttgtgggagttt
ggcaaagatagagctactgctacatatggagtgcttcccgctgcaaatgtccctccccca
tatgctcttgcctcggtgtctgccgtgaagtttgatcattgtggtcacagatttgtctct
gctgcatcagatggtactgtgtgcacgtggcagcttgaagtaggaggaaggagtaatgtt
cagccaacagaatcctctctttgctttaataattatacttcggatgtcacatatgttact
tcgagtggttcaatcatagctgccgcagggtatagctccagtggcgttaatgttgtcata
tgggatacacttgctccaccagcaacgtctcgtgcctccataatgtgtcatgaaggaggt
gcacgtgctcttgcagtgtttgataatgatttaggaagtggttctatctctccactcatt
gtaacgggtgggaaaggtggtgatgttggacttcatgacttccggtatatagctactgga
aagacaaaaagacagaagcatacagaaattggtgaccatggtgtgaattccatggttgac
acgcagaagaaaaccggtgatcagaatcgtaatgggatgctatggtatattcagaaggct
cacgcagggagtgttaccaaaatatctaccataccacataccagctttttcttgacggga
agtaaagatggagatgtaaaactttgggatgccaaaaatgcaaaactagtatttcattgg
ccaaaattgcatgaaaggcacaccttcttgcagccaagctcccgcggctttggtggtgtg
gttcaggcagctgttacagatattcaaattgtttcccatggttttctttcttgtggtgga
gatggtgctgtaaagtttgtgatgctcaatgatcatttaagtctgtga
DBGET
integrated database retrieval system
