Solanum dulcamara (climbing nightshade): 129886544
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Entry
129886544 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129886544 isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129886544
Membrane trafficking [BR:
sdul04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
129886544
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_VPS8
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_WDR3_1st
Beta-prop_RSE1_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_NOL10_N
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
129886544
NCBI-ProteinID:
XP_055817235
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All DBs
Position
4:complement(15243709..15261604)
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AA seq
1125 aa
AA seq
DB search
MYMAYGWPQVIPMESGLCPSSQQILYLKVINRLLLVVSPTHLELWSSSQHRVRLGKYKRS
SDSIQKEGENLRAVWSPDTKLIAVLTSSFYLHILKVQFTERKIQIGGKQPTGLFLASITL
LLNEQVPFANRNLTMSNVVCDNKHMIVGLSDGSLYNISWKGEFCGAFDAFDLDFQSHDGS
GVPKLASSLENGFASGGGLSSSKFSHHLSKNSAVIHLEFSLPLRLLVVLFSDGQLVLCSV
SKKGLKQMESIKAEKKLGSGDAVCAAVASDQQLLAVGTRRGVVELYDIAESASLLRSVSL
YDWGYSVEDTGAVSCVAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSASSPV
VKRNQECKYEPMMSGTSLMNWDEYGYRLYAIEEGSSERIIAFSFGKCCLNRGVSGTTYVR
QVIYGEDRLLVVQSEDTDELKLLHLSLPVSYISQNWPVQHVAASKDGMYLAAAGLHGLIL
YDIRLKKWRVFGDVTQEQKIQCRGLLWLGKIVVVCNYDDSSDGYELLFYPRYHLDQSSLL
CRKPLLTKPMVMDVYQDYLLVTYRPFDVHIYHVKLSGKLTPSSSPDLQLSTVRELSIMTA
KSHPASMRFIPDQLPREGVAGNGGLSTSLDLSIREPTRCLILRTNGELSLLDLDEGRERE
LTDSVELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPSPGADVFKQEDFLQLDPELE
FDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKKEE
ALRLAQLSAEKPHFSHCLEWLLFTVFEADISGSKNQSVIPNHSTNSSLLDKTCDLIRNFP
EYFDVVVSVARKTDGRHWADLFAAAGRSTELFEECFQSRWYRTAACYILVIAKLESPAVS
QYCALRLLQATLDESLYELAGELVRFLLRSGREYEPTTTDSEKLSPRFFGYFLFPSSYRR
QTLESKGSFKEPSAHVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYG
SARLDNFASGFELIGQKLQMGTLQSRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLFD
LFQHDLRLWKAYSITLKTHPSFVEYHDLLESLDEKLSSTSNSEET
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggccacaggtcatccctatggaatcagggctatgcccttct
tcgcagcaaattttgtacctcaaagtcatcaatcgtttattgcttgtggtttcccctact
catcttgaactatggtcctcctcacagcatagagtgagattgggcaagtacaagagaagc
tcggattcgattcagaaggaaggagagaatttgcgagctgtttggagtcctgatacgaaa
ttgattgcagttcttacctcttccttctatctacacattctgaaggtccaatttacagaa
aggaaaatacaaattggaggcaaacaaccaactggtttgtttctagcaagcataactttg
ctcttgaatgaacaggtgccttttgctaacagaaacttgacaatgagcaatgtagtttgt
gacaacaaacatatgatagttgggctttctgatggatctctgtataatatatcctggaag
ggagagttttgtggggcctttgatgcctttgatcttgattttcagtctcatgatggcagt
ggggttcctaaattagcaagttccttggaaaatggttttgcttctggcgggggtttatct
tcttctaaattcagtcatcatttgtcgaaaaactctgctgtgatccatttggagttctcc
ttacccttaaggttgcttgttgtgctattttctgatggacaattggtcttatgttctgtg
agcaaaaagggtctgaagcaaatggagtctatcaaagctgaaaagaaactgggctctggt
gatgctgtatgtgctgcagttgcttcagatcaacaactccttgctgttggtaccagaaga
ggtgttgttgagttgtatgacattgcagagtctgcttcgcttctgcgatctgtttctctg
tatgattggggatattcagtagaggacactggtgctgtcagttgtgttgcttggacacct
gataattcagcttttgcagttgggtggaagttaagagggctaacagtttggtctgtttct
ggctgtcgcttgatgtccaccattcgtcaaattggtttaagttctgcatcttctccagtg
gtcaagcgaaatcaggaatgtaaatatgaacctatgatgagcggtacctcgttgatgaac
tgggatgaatatggatacaggctttatgctattgaggaaggatcttcagagagaataatt
gcattctcttttggaaagtgctgtctgaacagaggagtctctgggactacttatgtccga
caagtaatctatggtgaagatcgattgcttgttgtgcagtcagaagatactgatgaacta
aaactcttgcatcttagcctaccagtttcctacatctctcagaattggccagttcaacat
gtggctgctagcaaggatggaatgtacttagcagctgctggccttcatggactgatctta
tatgacataagattgaaaaagtggagagtttttggagatgtcacgcaggaacaaaagatc
cagtgcagaggcttgttatggcttgggaagattgttgttgtctgcaactatgatgattct
tctgacgggtatgaattacttttctatcccagatatcaccttgatcagagttcacttcta
tgtcggaaacctttgcttaccaaacctatggtcatggatgtgtaccaagattatcttctt
gtcacttaccgaccttttgatgtccatatttaccatgtgaagttatctggtaaactaacg
ccttcgagttctcccgatttacagctttctacagtacgagagctatcaatcatgactgca
aagagccatcctgcgtcaatgcgttttattcctgatcagctcccaagagaaggcgttgca
ggaaatggtggcctgtccacttctttggatctgtcaatccgagagcctacccgatgctta
atactaaggacaaatggagagctttcacttcttgatttggatgaggggagagaaagagag
ctcacggattctgtagagttgttttgggttacctgtggtcagtcagaggagaaagcaagc
ttgattgaggaagtttcatggttagactatggccaccgtggaatgcaggtttggtatcca
tcccctggtgccgatgtttttaagcaagaggattttttgcagttggatccggagctggaa
tttgatcgtgaggtttatcctcttggtttgcttccaaacgctggagttgtagttggtgtc
tcccagagaatgtcattttccgcatgtacagagtttccatgttttgagccatcacctcaa
gctcagactattttgcattgcctacttcgacatcttctacagagggataaaaaggaagaa
gcgctaagattggcacaattatcagcagagaagccacatttttcgcactgcttagagtgg
ctcctttttactgtgtttgaagccgacatttctgggagcaagaatcagagtgtgattccc
aaccattcaacaaattcctcacttctggataagacatgtgatttgattagaaattttcca
gagtactttgacgtggtcgttagtgttgcaagaaagactgatggccggcattgggcagat
ttatttgctgctgctgggagatcgactgagctatttgaggaatgcttccaaagcagatgg
tatcgaactgccgcttgctatatactagtaattgctaagcttgaaagtccagctgtaagt
cagtattgtgcattgcgtttgttgcaggcaacattggatgagtctttatacgaactggca
ggggaactggtgaggtttcttctcagatctggacgggaatatgaacccacaaccactgat
tctgagaagctatctcctagattctttggatattttctgtttccttctagttaccggagg
caaactttagagtccaaaggttcatttaaggagccgagtgcacatgttgcttctgttaag
aatattttagaaagtcatgcaagctatttgatgtctggaaaagaactgtcaaagctcgtt
gcgtttgtgaagggcacacagtttgatctcgtggaatacttgcagcgagaaagatatgga
agtgctcgtttggacaattttgcttcaggctttgaacttatcgggcagaagcttcagatg
ggaacattgcaaagtcgtttagatgcagagttccttttgtctcatatgtgctctgtgaag
ttcaaagagtggattgtagtactggccacgcttttgaggcggtctgaggtcttatttgat
ttatttcagcatgatttgcgcttgtggaaagcatatagcattactttaaagacccatccg
tcatttgtcgaataccatgacttgcttgaaagtttggatgaaaagctttcatccacttca
aattcagaagagacatga
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