Solanum dulcamara (climbing nightshade): 129886673
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Entry
129886673 CDS
T09577
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129886673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129886673
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
129886673
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
129886673
NCBI-ProteinID:
XP_055817435
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All DBs
Position
4:16875760..16882170
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AA seq
710 aa
AA seq
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MARNKEAVVLVIDVGPSMHSVLPEIEKVCSLLIQKKLVFSRYDEVGFVLFGTADTKNELT
EEVGGYEHVTVLRNIKVVDEDLVAALQNLPRGNVPGDFLDAIVVGMDMLIKKFGQTNKGK
KRLCLITNAVSAIKDPFEGTKEDQVITIATQMTEQSMKMDCVIVRMKQDWETNRRVVEEN
DFLMSVFSNKSSSKVAYVETPTSLLGALRTRNVSPVTIYRGDFEVSAQLKIKVWVYKKTS
EEKFPTLKKYSDKAPPTDKFATHEIKVDYEYKSIEDPNKVVPPEQRIKGFQYGPQVVPIS
PAELEAVKFKPEKSVKLLGFTDASNIMRHYYLKDVNIFIAEPGNKKAILALSALARAMKE
MNKVAIVRCVWRQGQGNVVVGVLTPNVSDKDNTPDSFYFNILPFAEDVREFQFPSFSNLP
SSMLPNEKQQDVADKLVQMLDLAPPGKQEVLPPDFTPNPVLERYYRYLDLKSKHPDAAVP
PLDETLRKITEPDVELLSRNKSIIEELRRSFELKDNPKLKKSARRIKERPSGSDEEREQF
NTDADVKAIDSIEYSSKTKVEKVGDVNPVKDFEEMMSRRDNPKWISKAIQDMKNRIFDLV
ENSCEGDTFHKALECLVALRKGCILEQEPKQFNDFLCRLCKFCHEKDLRSFCQYLTSPEI
TLITKAEAPDSEIPEHEARSFMVKPELDSQSMKSEAKAENDIMTIYLGGK
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtaataaggaagcggtagtgttggtgattgatgtgggtccttctatgcactca
gttttacctgagattgaaaaagtttgctcattgttgatacagaagaagctggttttcagc
agatatgatgaagtggggtttgtcttatttggaactgcagataccaagaatgaattgaca
gaggaagtaggtgggtatgaacacgtgacagttctgcgaaatatcaaagttgtagatgaa
gatcttgttgctgctttgcaaaaccttccacgaggaaatgttcccggagattttcttgat
gcgattgttgttggtatggacatgctcattaaaaagtttggacaaaccaacaagggaaag
aaacgcctttgccttattacaaatgctgtttctgccatcaaagatccatttgaaggaaca
aaggaagatcaagtaatcaccattgctacacagatgacggaacaaagcatgaagatggac
tgtgtaattgttagaatgaaacaagactgggaaacaaataggagagttgtggaagaaaat
gattttctaatgtcagtattctcgaataaatcttcctcaaaagtagcatatgtggaaact
ccaacttctttgttaggtgcacttagaactcgtaatgtatcaccagtcacgatatacaga
ggtgattttgaagttagcgcacaattgaagatcaaggtatgggtttacaagaaaacatct
gaagagaagtttcccaccctaaaaaagtactctgataaggctcctcccactgataaattt
gctactcatgaaatcaaggttgattatgaatataaaagcatagaagaccctaataaagtt
gtgccaccagaacagaggattaaaggttttcagtatggacctcaagtagttcctatatcc
cctgctgagttggaggctgtaaagttcaaaccagagaaaagtgtgaagctactaggattc
acagatgcttcaaatataatgcggcattactacctgaaagatgtaaatatcttcatagcc
gaacctggcaacaaaaaagccatccttgcactttctgctttggcaagggcaatgaaggaa
atgaacaaagttgcaattgtccgatgtgtgtggaggcaaggacagggtaatgttgttgtt
ggggtccttacaccaaatgtctctgacaaggataatactcctgattcattttacttcaat
attcttccctttgctgaggatgttcgggagttccagtttccttctttcagcaatctgcct
tcatcaatgctgccaaatgaaaagcaacaagacgtagcagataaattggttcagatgttg
gatctggcaccacctggaaaacaggaggtgttgccacctgactttacacctaatcctgtt
ctagagcgttactaccgctatcttgacctgaagtcaaagcacccagatgctgctgttcct
ccacttgatgaaaccctgagaaagataacagaacctgatgttgaacttctttctcgaaac
aagtccatcatagaggaactccgtaggtcttttgaactaaaagataatccaaagctgaaa
aaatcagcaagaagaattaaagagagaccttcaggatcagatgaggaaagagaacagttc
aacacagatgctgatgtcaaagctattgactccattgaatactcatccaaaacaaaagtt
gagaaagttggagatgttaatcctgtcaaagactttgaggaaatgatgtctcgaagagat
aatccaaaatggattagtaaggccattcaggatatgaaaaataggatctttgatcttgtg
gagaattcttgtgaaggagatacatttcataaagcattggaatgtttggtggctttacgc
aaaggttgcatccttgagcaggaaccaaagcagttcaatgatttcctgtgccgcctgtgt
aaattctgccatgaaaaagacctgagaagtttttgtcaatatctcacatctcccgaaatc
actttgataaccaaagcagaagctccagacagtgaaattccagaacacgaggctagaagc
ttcatggtcaagcctgaacttgactcgcaaagtatgaaatcagaggctaaagcagagaat
gatattatgactatatacctgggtgggaagtag
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