Solanum dulcamara (climbing nightshade): 129886730
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Entry
129886730 CDS
T09577
Name
(RefSeq) probable helicase CHR10 isoform X1
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdul03036
]
129886730
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
129886730
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
DUF4399
Motif
Other DBs
NCBI-GeneID:
129886730
NCBI-ProteinID:
XP_055817519
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All DBs
Position
4:17909391..17928923
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AA seq
814 aa
AA seq
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MGLGKTLQAISLLSYLKVYLKTPGLFLVLCPLSVTDGWMSEMAKFSPKLRVLSYTGEKEH
RHNLRRKIYEHMNREASDAKSLPFDVLLTTYDIVLLDEDFLSQVPWHYAIIDEAQRLKNP
SSVLYNVLKERFLMPRKLLMTGTPIQNNLSELWALLHFCMPSVFGTLEQFLSAFKEAGDP
SCPEADKAKEQFKILKYVIGAFMLRRTKSQLIKLGTLVLPPLTEITVMAPFVSLQKKIYM
SILRKELTQLLALASGAPNTRSLQNIVIQLRKACSHPYLFAGIEPEPYEEGEHLVQASGK
LLILDHLLQKLHACGHRVLLFAQMTQTLDILQDYLELRKYSYERLDGSIRAEERFAAIRS
FSHQSVNNRSKVEAETSAAFVFLISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRA
HRIGQTNHVLSINLVTEQSVEEVIMRRAQRKLQLSHNIVGDDVLDQEGKEMAGDEAGDLR
SIMLGLHMLDPEEVTNEESDKFDRNELTAMAETIIAFRNEERLARDDKFEVKPVNFLSEF
NVVTKRGPESINLDHILDETSYLKWVEKFKEASQTNHNPIFELGNRRGLPEEKHLKAEAT
KKKAEEEKLSKWETLGYHSLSVKDPVSAPDTDISSDSGAIHFVYGDCTRPSKVSPSEPTI
IFSCVDTSGSWGHGGMFDALARLSTSVPTAYERASEFGDLHLGDLHLIEITEDLAKGSDS
SHAPQWVALAVVQSYNPRRKVPRGNISIPDLERCLSKASYSAAQNSASIHMPRIGYQDGS
DRSEWYTIERLLRKYAALHGINIFVYYFRRASQS
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgggattggggaagactttgcaagctatatcattgctgagctatctgaaagtctatcta
aagactcctggactattcttggtactctgtcctcttagcgtgacagatggttggatgtct
gaaatggccaaattttccccaaaattgagagtactatcctatactggagaaaaggagcat
cggcacaacttacgtaggaagatatatgagcatatgaacagggaggcgtctgatgcgaaa
tcacttccttttgatgtgcttttgactacttacgacatagtattacttgatgaagatttt
ctatcccaagttccatggcattatgcaataattgacgaagcacaaaggctcaagaatcct
tctagtgtcctgtataatgtgctcaaagagcgttttcttatgccaaggaagttgttgatg
actggcacacccatacaaaacaacctttctgagctttgggctcttttgcacttctgtatg
ccttcagtttttggaacactggagcagttcctctctgcattcaaggaagctggagatcca
tcatgtcctgaggcagacaaagctaaggaacaattcaaaattttgaaatatgtaataggg
gcgtttatgctccgacgaactaaatctcagcttatcaagttggggactcttgtgctacca
cctcttactgagattactgtgatggcaccattcgtgtccctgcaaaagaagatatatatg
tcaatattaaggaaggagctaactcagctgctagcacttgcttctggagcacccaatact
cggtcattgcagaatattgtaattcaactacgaaaagcatgtagtcatccttaccttttt
gctggtatagaaccggaaccatatgaagagggagaacaccttgttcaggctagcggcaaa
ctgctaatactggatcatcttcttcaaaaacttcatgcttgtggacatagggttcttctt
ttcgctcagatgactcaaacacttgatatactgcaggattatctggaattgagaaaatat
tcttatgagcgtcttgatggttcaattcgtgcggaagagcgctttgctgcaatcaggagc
tttagtcaccagtcagtcaataatagatcaaaggttgaagctgaaacaagtgctgcattt
gttttcttgatttcaacaagagctggtggagttggattgaatcttgtggctgctgataca
gtcatattttatgagcaagattggaatccccaggtagacaagcaggccttgcagcgtgct
caccgaattggtcaaacaaaccacgtgttatctataaatttagtcacagagcaatcagtg
gaggaggtcatcatgcgtagagctcaacgaaagttacagcttagccacaacattgtagga
gatgatgtcttggatcaggaagggaaagagatggcaggagatgaagctggtgacttgcga
tctattatgcttggcttgcatatgctagatcctgaagaggtaaccaatgaagaatctgat
aaatttgataggaatgaattgactgcaatggcagaaacaattattgcgtttcgcaatgaa
gaacgtttggctagagatgacaagtttgaggttaagccagttaacttcttaagtgagttt
aatgtggttacgaaaaggggtccagagtctattaatcttgatcacattcttgatgaaact
tcatatctcaagtgggttgagaaattcaaggaagcatcacagaccaatcataatccaatt
ttcgagctgggaaataggcgaggcttgcctgaagaaaaacatttaaaagctgaagctaca
aagaaaaaggcagaggaggagaaattgtcaaaatgggagactctgggatatcactcatta
tcggtcaaagatcctgtatcagctcccgatactgatatctcctctgattctggggctatt
cactttgtttacggggactgcacccgtccttctaaagtgtctccatcagagccgaccatc
atattcagctgtgttgatacatcaggaagctggggtcatgggggtatgtttgatgcattg
gcaagactgtcaactagtgtacccacagcatatgagcgagcttctgaatttggtgatctt
catctaggcgatcttcatcttatagagatcacagaggatctagctaagggaagtgattca
tctcatgctcctcaatgggtagctttggctgttgtgcagtcatacaaccctaggcgcaaa
gtcccacgcggcaatatatctatccccgacttggagagatgtctgtcaaaggcatcgtat
tcagctgctcagaactctgcatcaatccacatgccaagaattggttatcaggatggttct
gacaggtcagaatggtatacaattgaacgtctgctgcggaagtacgctgctctacatggc
ataaatatttttgtgtattatttccgacgggcatctcagagctaa
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