Solanum dulcamara (climbing nightshade): 129886790
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Entry
129886790 CDS
T09577
Name
(RefSeq) transcription factor IIIB 60 kDa subunit isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129886790
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
129886790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
Zn_Ribbon_TF
YozE_SAM_like
BRF2-like_C_cyclin_rpt
DUF1033
Motif
Other DBs
NCBI-GeneID:
129886790
NCBI-ProteinID:
XP_055817610
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Position
4:complement(19104736..19129885)
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AA seq
615 aa
AA seq
DB search
MVWCVNCAQDKPTKDVDGKICCSFCGKVLEEDNFSIEPTFVKNASGQSQLSGSRVSTVQS
NYSASRERTLKEAYEGIEGMLCGLGIDGGESIAHPALSFYKIAVEKSFTKGRRKEQVQAA
CLYIACRENKKPFLLIDFSEYLRINVYILGAVFLQLCKILHLEEHPIVQKPVDPSLFIHR
FTDRLFGGRHPNISRSALHILASMKRDWMQTGRKPSGLCGAALYIASLSHGLSCSKSEII
KVVHICEATLTKRLIEFENTESGSLTIDEFNTRAEELEKEETLSLQLYSGSKGSGITEVL
CEHKKSVKLPFAHGLCERCYTDFVKLSGGLDGGSEPPSFQRAERERLMAKQDAEEIAGDP
SFPMSNQMENNVREYLEPEKGGNTQCVKNVHKSGSEQVGSFSVVKTDHIATPDTLHGMDG
IDHDESENFSDIDDAEVDSYLHNEQEKHYKKIIWETMNREYLEEQAAKEAAALEAKKHHE
FILANCPEDVQKFAAATAASVAKSKKEKQQKRAAELKNSGPAQTATEATKQMLAKKRLSS
KINYDVLEKLFDDSATENPKKARTAYDSMDDNGVKSDKIDPEVDETYEEAFGEDVHYGED
VGGYDYDQHYDLDDY
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtgtggtgtgttaattgtgcacaggacaagccgactaaagatgtggatggtaaaata
tgttgttccttttgtggaaaagtacttgaagaagataatttctctatcgagcccactttt
gtcaagaatgcttctggacagagccaattgtcaggaagcagggtgagcactgtccaaagt
aattattcagcttcacgcgaaagaacactaaaagaagcatatgagggtatagagggtatg
ctttgtgggctaggaattgatggtggtgagtcaatagctcatccagctttgtccttctat
aagatagcagttgaaaagagtttcacaaaggggcgtaggaaagagcaagttcaagctgct
tgtctttacattgcatgtagggagaacaaaaagccattcctactcattgacttttccgag
tacttgaggataaatgtgtacatattaggagctgtgttcttacagctttgcaagattcta
caccttgaagagcacccaattgttcaaaaacctgtggatccaagcctgttcattcatcga
ttcactgatcgtttatttgggggaaggcacccaaacatttctagatctgctcttcacatt
ttggccagcatgaagcgagattggatgcagacagggagaaagccaagtgggttatgtgga
gctgcactgtacattgcttctctttcacatggactgagttgttctaaatcagaaattatc
aaagtggtgcacatttgcgaagcaacattgacaaagcgtttgattgaatttgaaaacaca
gaatctggaagcttaacgattgatgagttcaatacaagagctgaggagcttgagaaagaa
gagacactgtccctgcaactttattcggggtcaaaaggatctgggatcacagaagtgcta
tgtgaacacaagaaaagtgtgaagctgccgtttgcccatggcctttgtgaacgttgttat
actgactttgtaaaactttcaggtgggcttgatggaggatctgaacctccatccttccaa
cgtgctgagagggaaagattaatggcaaaacaagatgctgaagaaattgcgggggatcca
agttttcccatgtccaaccagatggagaacaatgtccgcgagtatttagagcctgaaaag
ggagggaacacccagtgtgtgaaaaatgtgcataaatcaggatctgagcaagttgggtca
ttctcagtggttaaaactgatcatattgcgactcctgatacattacatggcatggatggt
attgatcatgatgaatcagagaacttttccgatatcgatgatgcagaggttgacagttat
cttcacaatgagcaggaaaagcactacaagaagatcatttgggaaacaatgaaccgagaa
tatcttgaggaacaagcagccaaggaagcggctgcattagaagccaagaagcatcatgag
ttcattttagctaactgtccagaggatgtacagaagtttgctgctgctaccgctgcttct
gttgcaaaatcaaaaaaggaaaaacaacagaaaagggctgcagaattgaaaaattctggc
cccgctcaaaccgctacagaagcaacaaagcaaatgttagctaaaaagaggctgagctct
aagatcaactacgatgtgctagagaagctttttgatgattctgcaactgagaacccaaag
aaagctcgaactgcttacgattcaatggatgataatggggtaaagagcgacaaaattgat
ccggaagtagatgagacttacgaagaggcatttggcgaggatgtgcattacggtgaggat
gttggaggatatgactatgatcaacactatgatttggacgattattga
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