Solanum dulcamara (climbing nightshade): 129886951
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Entry
129886951 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129886951
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129886951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129886951
03041 Spliceosome [BR:
sdul03041
]
129886951
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129886951
Spliceosome [BR:
sdul03041
]
Complex B
Other components
Prp19-related factors
129886951
Complex C
129886951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
129886951
NCBI-ProteinID:
XP_055817836
LinkDB
All DBs
Position
4:22221962..22230418
Genome browser
AA seq
915 aa
AA seq
DB search
MSIPRELYPSEEDLPYEEEILRNPFSLKQWWRYLVARADSPFTKRRVLYERALQALPGSY
KIWHAYLRERLELVRNLPINHSLYQALNNTFERALVTMHKMPRIWIMYLVSLTQQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDLLEFL
LNSELWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSDSEVEDEGNNGEVGAEEDVDEEDDRLNVAKLEKKLGEFWLNDDKDVDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTIDPMKAVGK
PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL
ELMRRATAEPTVEVKRRVAADGNEPVQIKLHKSLRLWLLFVDLEESLGSLESTRVVYERI
LDLRIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEEAPADAVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPANEKLS
MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARELYK
HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD
QMQTLEEAKDVLKKAGVADDEMAVLERQLAPPENDTKSKEQSRVVGFVSAGVVESNGQKV
TANNEDIELPEESDSEEDEKIEIALKEVPDAVFGGLIRKREESDEAEGDSTAKNKDNDGP
LGALERIKRRKQQAS
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcccgagggagctctaccccagcgaagaagacctcccttacgaggaagaaatc
cttagaaatccgttcagcctcaagcagtggtggcgctatctagtggcacgagcagattcg
ccattcacaaaacgaagagtgctttacgaacgagctctacaagcacttcccggaagctac
aaaatatggcacgcgtatctccgcgaacgtctggagttagttcggaatcttccaatcaat
cactccctgtaccaagctctaaacaacactttcgagagagcccttgttacaatgcacaaa
atgccacggatttggatcatgtacttggtgagtttaactcagcagaagctcgttacacga
acacgacgcactttcgatagagcattgtgtgcattacctgttactcagcatgataggatt
tgggaaccttatttagtgtttgttagtcaaagaggaattcctattgaaacgtcacttagg
gtttataggaggtacttgaagtatgatccttcccatattgaggatttgcttgagtttttg
ttgaattccgagctgtggcaggaggcggcggagaggttagctggtgtattaaatgatgat
cgtttttattctattaaagggaagactaaacatagactttggttggagttgtgtgacttg
ttaacacagcatgctactgaaatatcaggcttgaatgtggatgcgataattagaggaggg
attaagaagttcaccgatgaggttgggaggctttggacttctttggcggattattacatt
aggaggaagttggttgagaaggcaagagatattttcgaagaagggatgacaactgtggtg
actgttagggattttagtgttatctttgatgcatactcccagtttgaggagagtatgctt
gccttgaaaatggaggagatgagtgatagtgaggtggaggatgaagggaataatggtgag
gttggggcggaggaagatgtggatgaggaggatgataggttgaatgtggcaaaattagag
aagaaacttggagagttttggttaaatgatgataaggatgttgacttgagattagcaagg
ctagaacatcttatggataggaggccagagctcgcgaatagtgtccttttaaggcaaaat
ccgcataatgtagaacaatggcatagaagggtaaaactattcgaagggaatccgacgaag
caaatattaacgttcactgaggcagttcgaactattgacccaatgaaggctgtggggaag
ccacatactttgtgggttgcatttgcaaaactttatgaaaaccataaggatattgcaaat
gcaagagtcatctttgataaggcagtgcaggtgaactataaaactgttgatcatctggct
agtgtttggtgtgaatgggccgagatggaactacggcacaggaatttcaagggtgctcta
gaactgatgagacgtgccactgctgaaccaactgttgaggtcaaacggagagttgctgct
gatggaaatgaaccagtgcaaattaagctacacaaatctctaaggctttggttactgttt
gtggatttggaggagagtctaggaagcttagagtcaactcgtgtggtctatgagcgaatt
ttggatctgagaattgctacaccacagattataataaactatgcagtacttctggaggat
cacaagtactttgaggatgcattcaaggtttacgagaggggtgtgaagatcttcaagtac
ccacatgtaaaggatatatgggttacctatctttccaaatttgtgaagagatatgggaag
tcaaagttggaacgagctagagagttatttgagcatgctgtagaagaggcccctgctgac
gctgtgaagccattgtatcttcaatatgctaaattagaggaagactatggtcttgcaaag
cgggctatgagggtttatgatcaagctacaaaagctgttccagcaaatgagaaattgagc
atgtacgagatctacatagctcgtgcagctgagatatttggtgttccacgaacacgggag
atttatgaacaagcaattgagtctgggcttccagacaaggacgtaaaagttatgtgctta
aagtatgctgaacttgagaagagcctaggagagattgatcgtgcccgtgaactatacaag
cactcatcacaattcgcagaccctagatctgaccctgatttctggaacaagtggcatgag
tttgaggtgcagcatggtaatgaggataccttccgcgagatgctccgtgtgaagaggagt
gtatctgcaagctacagccagacacattttatcctaccggagtatctcatgcaaaaggat
cagatgcagacccttgaggaagcaaaggatgtgttgaaaaaagctggtgttgctgatgat
gagatggcagttcttgagaggcagttagcgccccctgaaaatgatacaaagagcaaagaa
cagagtcgggtagttggatttgtaagtgcaggagtagttgaatcaaatggacagaaagtc
acagcaaacaatgaggatattgagctaccagaggaaagtgattctgaagaggatgagaaa
attgaaattgcactgaaagaagtccctgatgcagtgtttggaggtctaatccgtaagagg
gaagaaagtgatgaagcagagggcgactctactgccaagaataaagataatgatggccct
cttggcgcgctagaaagaataaaacgaaggaaacaacaagcatcttaa
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