Solanum dulcamara (climbing nightshade): 129886995
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Entry
129886995 CDS
T09577
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129886995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdul03009
]
129886995
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
129886995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
PEP5_VPS11_N
Beta-prop_LRRK2
WD40_like
Ge1_WD40
Beta-prop_SCAP
TAF1C_beta-prop
VID27
Beta-prop_IP5PC_F
Cytochrom_D1
WDCP
VPS8_N
Motif
Other DBs
NCBI-GeneID:
129886995
NCBI-ProteinID:
XP_055817897
LinkDB
All DBs
Position
4:complement(23150040..23156378)
Genome browser
AA seq
907 aa
AA seq
DB search
MGIFEPFRAIGYITTNVPFSVQRLGTETFVTVSVGKAFQVYNCAKLSLVLVGPQLPKKIR
ALASYREYTFAAYGSDIAVVKRAHQVATWSGHSAKVNQLLLFGEHVLSVDVEGNIFIWQF
KGIDKNPAPIGHIKLEDKFSPSCIMHPDTYLNKVVLGSQEGALQLWNISTKKKIYEFKGW
GSSITCCVSSPALDVIAVGCADGKIHVHNIRYDEEVASFSHSTRGAVNALSFSTDGQPLL
ASGGSSGVISIWNLEKRRLHSVIKEAHDSSIVSLQFFANEPVLMSSSADNSMKMWIFDTS
DGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVSKR
AKKLKLKKEDIKLKPVIAFDVAEIRERDWCNVVTCHMDTPRAYVWRLQNFVLGEHILTPC
PENPTPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGNYVDVLEGENAAHNGEVIGI
ACDATNTIMISAAYHGDVKVWDFKGRHLKYKWEVGCSLVNIVFNRSNGLLATVADDLVIR
LFDVIAQRLVRKFEGHSDRITDMCFSEDGKWLLTSSMDGTLRIWDVILARQVDAIQVDLS
ITALSLSPNMDILATSHVDQNGVYLWVNQAMFSGEASFASYGSGKEIVNVKMPSAASEKD
GEKSDNRTIFKPLESSDTSQFLNPSHQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEP
PKKPEKAPFFLPSIPSLSGEILFKPGEGTNEESNAPNTGSEESSKKTDIPASKFLQILKS
CAEKENFAPFTNYIKSLSPSILDMELRMLQIIDDDDEQEPEKRQELHFIELLLDYFIHEI
SCRSNFEYIQALIRLFLKIHGETVRRQSKLQEKARKLLDVQSAVWQKIDKLFQNTRCMVA
FLSNSQL
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggggattttcgagccttttagagcaattggatacattacgaccaatgttcctttctct
gtacagagacttggtaccgagaccttcgtcaccgtcagtgtcggcaaagctttccaagtt
tacaattgcgctaaactcagtttggttctcgttggcccgcaattgccaaagaagattcga
gctcttgcatcttatcgcgaatatacttttgctgcctatgggagtgacattgcagttgtc
aagcgtgctcatcaggtggcgacatggagtggacatagtgctaaggtgaaccagttgctt
ctttttggtgaacacgtcctaagtgttgatgttgaaggcaatatcttcatatggcaattt
aaaggtatagacaaaaatcctgctccgatcggacacataaagctagaggacaaattctcc
cctagctgcataatgcatccagatacttatttaaataaggttgttttaggaagtcaagaa
ggtgctttgcaactctggaatataagcacaaagaagaaaatttatgagttcaagggatgg
ggatcttctattacttgttgtgtttcatctccagcactagatgttattgccgttggatgt
gcggatgggaagattcatgttcacaacattcgctatgatgaagaggtagcttcatttagt
cactctacaagaggcgctgttaatgccttatcattcagcactgatgggcagccccttctt
gcttctggaggttcatctggtgttataagcatatggaatcttgagaagagaaggctgcat
tctgtcatcaaggaggcccatgactcctccatagtatcgcttcagttctttgctaatgag
cctgtcctaatgagttcatctgcagacaattcaatgaaaatgtggatcttcgatacaagt
gatggggaccctcgtttactaaggtttagaagtggtcatagtgctcctcctctatgtatc
aagttctatgcaaatgggcgtcacatcttatctgctggtcaagatcgagcgtttcgtctt
ttttctgttgttcaagatcaacaaagtagagaactttcccagcgacatgtttctaaaaga
gcgaagaagcttaagttgaaaaaggaggatataaaattgaaacctgttattgcatttgat
gttgctgaaattagggaacgtgattggtgcaatgtggttacgtgccatatggacacccca
cgtgcttatgtatggaggctccaaaattttgttcttggcgagcatatattaactccgtgc
cctgaaaatccaactccagtcaaggcttgcgctatcagtgcctgtggcaattttgctgta
ctagggactgctggcggttggattgagcgatttaatcttcagtcaggaattagccgtggc
aattatgttgatgtgttggaaggtgaaaatgctgctcacaatggggaagtaattggcata
gcttgtgatgcgacaaataccatcatgataagtgctgcataccatggtgatgtaaaagtt
tgggacttcaaaggacgccacttaaaatataaatgggaggttgggtgttccttagttaat
attgtgttcaaccgttctaatggtcttttggctactgtggcagatgacttagttatccgt
ctatttgatgttattgcacagaggttggttcgtaaatttgagggacattctgaccgtatt
actgatatgtgctttagtgaggatgggaaatggcttttgacatccagtatggatgggact
ctcagaatttgggatgtaattttagctagacaagttgatgcaatacaggttgatctgtct
atcactgcattatctttatcgcctaatatggatatcttggccacatcgcatgttgatcaa
aatggtgtctatctgtgggtaaatcaagcgatgttctctggagaagccagctttgcatca
tatggaagtggaaaagaaatagtcaatgttaagatgccatctgctgcttctgaaaaagat
ggtgaaaaaagcgataacagaactatctttaagccattggagtcctctgatacttctcag
tttctaaatccaagccatcaaattccagatctagtcactctttcacttttgcctaaaagt
caatggcagagcttgatcaacctggacataataaaagcccgcaacaaacctatcgagcct
ccgaagaaacctgaaaaggcaccttttttcttgccttcaattccatctctgtccggtgag
atattatttaaaccaggcgaaggtactaatgaggagagtaatgcaccaaataccggatcg
gaagagagcagtaagaaaactgatattccagcgtccaaattcttgcaaattctcaagtca
tgtgcggagaaagagaattttgcaccattcactaattatatcaaaagcttgtctccttca
atattggatatggagctgcgaatgcttcagataatagatgacgatgacgagcaggagcct
gaaaagagacaagaattgcattttattgaactgctactcgattactttatacacgagatt
tcatgcagaagcaatttcgagtatatacaagctctgattagattgtttttgaagattcat
ggtgaaacagtccggcgccagtcaaaactgcaggagaaggcaagaaagcttttagatgtt
caatctgcagtttggcaaaaaatagataaattgttccaaaataccagatgcatggttgcg
tttcttagcaactcccagctttga
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