Solanum dulcamara (climbing nightshade): 129887104
Help
Entry
129887104 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129887104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129887104
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129887104
Spliceosome [BR:
sdul03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129887104
Complex B
129887104
Complex C
U2 SnRNP specific factors
129887104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129887104
NCBI-ProteinID:
XP_055818035
LinkDB
All DBs
Position
4:complement(25625290..25636723)
Genome browser
AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERNQAPQRLYVPPSSRSGGSHDNYEDTDLDNIEYDEHDA
VGGKTDDGGGGGGEDDEIDPLDAFMEGIHEEMKAAPPPKPKEKLDKYKDDVDDDPMESFL
RAKKDVGLQLAADALHAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPIPALD
HSEVDYEPFNKDFYEEKPSISGMSDPEVNEYRTSLAIRVSGFDVPRPIKTFEDSGFSVEL
MKAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE
EGPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIVVATP
GRLIDMIRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK
VEKLAREILTDPVRVTVGEIGTANEDITQIVEVIPSDTEKLPWLLEKLPGLIDNGDVLVF
ASKKATVDEIESQLAQKGFRVAALHGDKDQVSRTETLQKFKSGIYHVLIATDVAARGLDI
KSLKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELANSLVAAGQT
VSVDLMELAMKDGRFRSKRDARKGGGKRAKGRGGGNNKGVRGVDFGLGIGYNPESNNPPQ
SAVPSRSAAVNSLRTGMMAQFKNSFVAASSNSQNQGVNNTAGAFPNKKMVLQGFVSGGTI
GGNTNTSHISSTFTAATSGAYTSSQPARDGANQKSSESSKEKSRERRRPSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggatttgggattaatcggcaaacgacgtacaac
ttcgagcggaatcaagctcctcagagactgtacgtcccgccatcctcacgttctggaggt
agccatgataattacgaagataccgacttagataacattgagtacgatgaacacgacgct
gtcggagggaaaaccgatgatggaggcggaggaggtggggaggatgatgaaattgatcca
cttgatgcgtttatggaagggattcatgaagaaatgaaggctgcaccacctcctaagccg
aaagagaagttggacaagtataaggatgatgtagacgatgatccaatggaaagttttctg
agagcaaagaaggatgtagggttacaattggctgctgatgctcttcacgctggttataat
tccgacgaggaggtgtatgctgcagcaaaggctgttgatgcaggattagttgagtatgac
tccgacgataatcctattgttgttgataaaaagaagattgagcctattcctgctctggat
catagtgaggttgactatgagcctttcaacaaggatttttatgaggagaagccttctatt
tcaggtatgagcgatccggaagttaatgaatataggacaagcttggccattcgtgtatca
ggctttgatgttccaagaccaattaagacatttgaagactctggtttttctgttgagttg
atgaaagctatcagtaaacagggatatgaaaagcctacaccaatacaatgtcaagcatta
ccaattgtgctctctgggagagatattattggtattgctaaaaccgggtccggtaagact
gctgcatttgtgcttcctatgattgtccacatcatggatcagcctgaacttcagaaagaa
gaaggtcccattggagttatttgtgcacccactagggaattagcacatcaaatatttgtg
gaggcaaagaaattctcgaaatcgcatggtatccgcgtgtctgcagtttatggaggaatg
tctaaattggatcaatacaaagagctaaaggcagggtgtgagattgttgttgctactcca
gggaggttgatagatatgatcagaaagaaggcatttacaatgttgagagcaacttatcta
gtgcttgatgaggctgatcggatgtttgaccttggtttcgagcctcagataaggtccatt
gttggtcaaattagacctgatcgccaaacattgctcttttcagcaactatgccccgcaaa
gttgaaaagcttgccagagaaatattgacggatcctgtaagagttactgtgggtgagatt
ggcacggctaatgaggatattacacaaatagttgaagtgattccttcggatactgaaaaa
ttgccttggcttctggagaagctccctggactgattgacaatggtgatgttcttgtcttt
gcttcgaaaaaggcaacagtggatgagattgaatcccaattggctcagaagggatttaga
gttgcagctctccatggtgacaaggatcaagtttctcgcacagagacactgcaaaaattt
aaatctggcatatatcatgttctcatcgcaacggatgttgctgctcgtggtcttgacatc
aaatcacttaagtcagtggtgaactatgacatagctaaagatatggacatgcatgttcac
agaattgggaggacaggtcgtgctggtgacaaagatggaacggcctacacccttattact
cataaggaagcacgttttgctggtgaactggcaaacagtttggttgctgctggtcaaact
gtatctgtggacctaatggaacttgctatgaaggacggaaggtttcggtccaaaagggat
gctaggaaaggaggtggaaaaagggccaaaggaaggggaggaggaaacaataaaggtgta
cgaggtgtggattttggtctagggattggatacaatcctgaatcaaataaccctccccag
agcgctgttccaagccgttctgcagcagttaattccctgaggacaggcatgatggcacaa
tttaaaaatagctttgttgctgcatcatcaaattctcaaaatcaaggggtgaataacaca
gctggcgcgtttcccaacaagaaaatggtcttgcaaggcttcgtctctggtgggactata
ggtggaaatactaatacttcccatattagttccacatttactgctgcaacatctggggca
tatacttctagtcagccagctagagatggagctaaccagaaaagttcagagagttcaaag
gagaagtccagagaaagacggaggccttctggttgggatcgttga
DBGET
integrated database retrieval system
