Entry |
|
Name |
(RefSeq) protein RDM16-like
|
KO |
K12843 | U4/U6 small nuclear ribonucleoprotein PRP3 |
|
Organism |
sdul Solanum dulcamara (climbing nightshade)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:sdul00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129887396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:sdul03041]
129887396
Spliceosome [BR:sdul03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
129887396
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
4:complement(44674134..44679182)
|
AA seq |
790 aa
MDRASEKDKSSRDYRDKHRSSKDKHYEDDHRHHHHRSKHRSEDGHHRSEREGSRERAHYH
DRKEESVEKKHSHKRKDRAESADRSNADDKRARVSDNKKEKRRTEDENGRDKQRVDDGDW
RDKDEERRERRRFEDKAKEEDVEVDEERRRGGFEITTSKKETKEEPTDHVQDEAVGSIAK
IPGKSSTDGTASGAGKSGSLSLDALAKAKRALQMRKELAEKLKKIPALNKNKGPNFTREG
LPQVGAKESLQPSANAAIFPTPVASSDAGVLLTPGSAPSTSNPPPSGLPHLVGLTAQKYE
AVKRAQELASKMGFRQDPEFAPLINMFPGQMPPEVTLQPKPAKAPVLRLDALGREIDEQG
NIVNMPKPSSTLKVNINKKKQEAFQILKPELEVDPEKNPHFDPSMGIDKNKILRPKRMTF
QFVEEGKWSRDAEIIKLKSQFGEARAKELKAKQAQLTKAKAEPDINPNLIEVSERVIAKE
KQKEPIPEVEWWDAPLLRSGSYGDIVDGNVTNEQLKIEKITIYVEHPRPIEPPAEPAPPP
PQPLKLTKKEQKKLRTQRRLAREKERQEMIRQGLVEPPKPKVKMSNLMKVLGSEATQDPT
KLEMEIRSAAAEREQAHVDRNIARKLTPDERREKKERKLFDDSNIAPESIVSVYKINDLS
HPQTRFKVDVNAQENRLTGCAVISGGISVVVVEGGKKSIKRYGKLMLRRIDWAAAGKKED
DEGEGEGEGEDEDKPLNKCVLVWQGSVAKSSFHRFFVFDCRTEAAARKVFVDAGVPHYWN
LAVNFKDDEF |
NT seq |
2373 nt +upstreamnt +downstreamnt
atggatagagcttctgagaaagacaaatcaagtagggattacagagacaaacaccgtagc
tccaaggataagcactatgaagatgatcatcgccatcatcaccatcgttcgaagcatcga
tccgaagacggccaccaccgatctgagagagaggggagccgagaaagagctcattatcac
gatagaaaggaggaatccgtggagaaaaagcattcgcataagaggaaagaccgagcagaa
agtgcggatagaagcaatgcggatgacaagagagctagagtttctgacaacaagaaggag
aagaggaggactgaggatgagaatggtagggataagcagagagttgatgatggagattgg
agggataaggatgaggagagaagagagaggaggaggtttgaggataaagcaaaggaggag
gatgtggaagttgatgaagaaaggaggagaggtggatttgaaattacaacttccaagaaa
gagacaaaggaggagccaactgatcatgtccaggatgaggctgttggttccattgctaag
attcctgggaaatctagtacagatgggacagcttctggtgctggcaagagtgggagctta
tctcttgatgctttagcaaaagcgaagagagctttacaaatgcgaaaggagttggctgaa
aagcttaagaagatacctgcactaaacaagaataagggccccaactttactagagaggga
cttccacaggtgggagccaaggagagccttcaaccttcagctaatgcagcgatttttccc
actccagttgcatcttctgatgcaggggtattgctaacacctggttcagcaccaagcaca
tcaaatccaccacccagtggtttgcctcatcttgtggggctcacagcacaaaagtatgaa
gcggtaaagcgtgcacaagagcttgcttctaagatgggattccgacaggacccagaattt
gctcccctcattaacatgtttccagggcaaatgccaccagaggttacccttcagccaaag
cctgcaaaagcccctgttcttcgattggatgccctaggcagggaaatcgatgagcaggga
aatattgtcaatatgcctaagccatctagcacccttaaggtgaacatcaataaaaagaaa
caagaagcatttcaaattctcaaacctgaacttgaggttgatcctgagaaaaatccccat
tttgatccaagcatgggcattgacaagaacaaaattttgaggcccaagaggatgacattt
cagtttgtggaggaaggcaaatggtccagagatgcagaaataatcaagttaaagagccaa
tttggtgaagcaagagccaaagagctaaaggcaaagcaagcacagttgaccaaggctaaa
gcagagcctgacataaatccgaatctcattgaggtatcggaaagggttatcgccaaggaa
aaacagaaggaacctattcctgaagttgagtggtgggatgctcctctgttacgatctggt
tcttatggtgatatagttgatggtaatgtaactaatgagcagttgaagattgaaaagatc
accatatatgttgaacaccctcgccctattgagcctcctgctgaaccagctccacctcct
ccccaaccgttgaaactaaccaaaaaggagcaaaagaaacttcgaacccagcgaagattg
gccagagagaaagaaagacaagaaatgatacgacaaggcctggtagaaccaccaaagccg
aaagttaaaatgagcaatctaatgaaagttcttggctcagaagccacacaggatcctaca
aagcttgaaatggagattagaagtgctgctgctgagcgtgagcaggctcatgtggacagg
aatattgctcgtaagcttactcctgatgagcgtcgagagaagaaagagaggaaacttttt
gatgactcaaatatcgctccagagagtattgtttcagtatataaaattaatgacctctcc
cacccacaaacccgcttcaaggtggatgttaacgctcaggagaatcgtttgactgggtgt
gcagtgatctcaggaggtattagtgttgttgttgttgaaggtgggaaaaaatcaatcaag
cgatatgggaaacttatgcttaggagaattgattgggcagctgctggtaagaaagaagat
gatgaaggtgaaggtgaaggtgaaggtgaagatgaagataagcctctcaacaagtgtgtg
ttggtctggcaaggtagtgttgcaaaatcaagcttccataggttttttgtttttgactgc
aggactgaagctgctgctcgtaaagtttttgttgatgctggggttcctcattactggaat
cttgctgtaaactttaaagatgacgaattttaa |