Solanum dulcamara (climbing nightshade): 129887398
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Entry
129887398 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129887398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129887398
03009 Ribosome biogenesis [BR:
sdul03009
]
129887398
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129887398
Spliceosome [BR:
sdul03041
]
Complex A
U1 snRNP components
U1 related factors
129887398
Complex B
129887398
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
129887398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
129887398
NCBI-ProteinID:
XP_055818454
LinkDB
All DBs
Position
4:44958789..44967557
Genome browser
AA seq
1181 aa
AA seq
DB search
MATPEAATASLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPSALPPPLP
PGPPPEASAPKLAPIPGASSVQQYDSQGQQSQQAFAQQGQMTHMSQHPHVTQQVPHGSQG
VSTGQQQGSPAGPAMQQVSFMPQLRSQMIQQPGHQMPSQMGQTPNQSGPHVSQPAMQQIM
PQQLGSQAQVFPSGQMGQQHGYQFSHHQAQHVAYPQNLPPQGQQIPQQQNQHVPQNQQFS
HQQEHKVGFQQREDVDFPQGKQVGFSPQQVQQTGASSAQNPPVGTGSVIRHQMSAQPAQA
LQLGCSTGNVQQPSSLGQWQQNTNDSGQKPPGPHFPGHMGSSIAHGHELDTPPVGSKGYE
ENTLGRGGNDYYYNSNVDGRTRPPPQQPKLAAIPVARNHHEMRMGDPPLQNPVPAHPSGF
NSMGGPPMQNIYGQAAGGPPFPNPNLMRPPGALTGPPGSIHPSSVEVYLQKHEVTATGGD
VPAPFMTFEDTGFPPEILREIQFAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGY
LIPAFVHLKRRRNNPQNGPTVVVLSPTRELATQIQDEALKFGRSARVSCTCLYGGAPKVH
QLKELERGTDIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEI
PPQRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYIEVVPQMEKQRR
LEQILRSQERGSKAIIFCSTKKLCDQLARSIGRSFGAAAIHGDKSQGERDWVLNQFRSGK
TPILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFLSDQDWK
YAPDLVKVLEGANQQVPPNVREMALRAGGRDRGGMNRSDLFDGDGGRTRWDSGGRGGMRD
GAFGGRGGTRDGGFGGRAGMRDGGFGGPGGMRDGGFGGPGGMRDGGFGGPGGMRDGGFGG
RGGRESNFGGRGGRDGHFGGRVGMRDNHFGGRGGRGGAHSGWDRNDRYDNSDVRAHGRGR
GRGRFDNRRDMPSRSRGRSYSPSPERVRTWGSRSRSRSRSRSRSRSYSRSYSRSRSRSYS
PRRSRSYSRSRSRSRDRYQRRPRQSKFDQMDPDPGMSSVQIAPPSVMPPLPIGAPVDGFS
GAASVESKPNMEVAPESGMSPMSPGTRGNGLPGSEVIEQNP
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcctgaggcagctacggcttccttaggacctcgttatgcacctgatgatcca
actttaccccaaccttggaagggcttaattgatggtagtactgggttactgtactactgg
aatccagaaactaatgttactcagtatgagaagccatcagctttacctcctccactgccg
cctggtccacctccggaagcttctgcacctaagttggctcctataccaggagctagctca
gtgcaacaatacgatagtcaaggccaacagagccagcaggcctttgctcaacaaggccaa
atgacacacatgtcacaacatccacatgtaacacaacaggtaccacatggatcacaaggt
gtttctacagggcagcaacaaggatcaccagctggtcctgccatgcaacaggtatccttt
atgccgcaacttcggtctcaaatgatccagcaacctggtcatcagatgccatctcaaatg
ggacaaactcctaatcagtcagggccacacgtttctcaaccagcaatgcaacaaataatg
ccacagcaacttggctcccaagcacaagtattcccaagtggacaaatgggacaacaacat
ggttatcaattttctcatcaccaggcacagcatgttgcgtatccacaaaatttgcctccg
cagggacagcaaattccacagcagcaaaatcagcacgttccgcagaatcaacagttttcc
catcaacaagagcataaagtgggatttcagcaaagagaagatgttgattttccccaaggg
aaacaagttgggttttcgccacaacaagttcagcaaactggtgcatcatctgctcagaat
ccgcctgtggggactggttctgttatcagacatcagatgtctgctcagcctgctcaagct
ttgcagttgggctgttctactggaaatgttcaacaaccatcatctttgggtcaatggcag
caaaatacaaatgattcaggtcagaagccgcctggtccacattttccaggtcacatgggc
tcaagtatagcacatggtcacgagctggatacacccccagttggatcaaagggttatgag
gaaaacacacttggaagaggaggaaatgactattattacaacagtaatgtagatggtcga
actaggcctccgcctcagcaacccaagcttgcagctatacctgtagcaagaaatcatcat
gaaatgagaatgggtgatcctccgcttcaaaatccagtaccagctcatcctagtgggttc
aatagcatgggtggtccgccgatgcaaaatatctatggtcaagcagctggtggccctcca
tttccaaatcctaacctcatgcggccacctggagcactcacaggacctccaggatccatt
catccatcatccgttgaggtttaccttcagaagcatgaagtaactgcaacaggtggtgat
gtccctgctccattcatgacatttgaagatactggcttcccgccagaaatactgagagag
attcagtttgcgggattcacttcacccactcccattcaggcacaaacatggcccatagcg
ttgcaaaatagggatatagtagccattgccaagacaggttctggcaaaacattgggctat
ctaattcctgcatttgtccaccttaaacgacgccgcaataatcctcaaaatggcccgaca
gtggtggttttatctccaacacgagagcttgccacacaaatacaagatgaagcattgaag
tttggtcgatctgcaagggtttcttgcacgtgcttgtatggaggtgcacctaaagttcac
cagttgaaagaactagagcgcggaacagatattgttgttgcaactcctggtcggctgaat
gacatccttgagatgaaaagaattgactttaggcaggtttctcttctcgtgctagatgag
gctgatcgaatgcttgacatgggttttgaacctcagatccgcaagattgtaaatgagata
cctccacaaagacaaacacttatgtacacagcaacatggcccaaagaagtgcgaaaaata
gctggtgatcttcttcgaaatcctgtccaggttaatattgggaatgttgatcagcttgca
gcaaacaagtctatcacacagtacattgaagtagtcccgcaaatggaaaagcagagacgg
ttggagcagattcttagatcccaagaaaggggttctaaagctattatattctgttccaca
aagaagttgtgcgaccaacttgcgcgcagtattggtcgaagctttggagctgcagctatt
catggagacaagtcccagggtgagagggactgggttctcaatcaatttcgctctggtaag
accccaattttagtagcaactgatgttgctgctagaggactggacatacctgatattaga
gttgtgatcaactatgattttccgactgggattgaggattatgttcaccgaattggaaga
actggtagggctggtgcaactggtgtttcatacacctttttatctgatcaggactggaaa
tatgctcctgatcttgttaaggttctggaaggtgctaatcagcaagtgcctccgaatgtg
agagagatggctttacgtgctggtggcagggatagaggtggcatgaaccgttctgatctt
ttcgatggtgatggcggccgcacacgttgggattctggtggccgtggtggtatgagggat
ggtgcgtttggtggccgtggtggtacgagggatggtgggtttggtggccgtgctggtatg
agggatgggggatttggtggccctggtgggatgagggatggtgggtttggtggtcctggt
gggatgagggatggtgggtttggtggccctggtgggatgagggatggtgggtttggtggc
cgtggtggaagggagagcaactttggtggccgtggtgggagagatggtcactttggtggc
cgtgttgggatgagggacaaccattttggtggccgtggtggcaggggtggtgctcatagt
gggtgggacaggaatgatcggtatgacaattcagatgtgcgagcacatgggaggggtcgc
gggcgtggacgttttgacaatagaagagacatgccaagtcggagtagaggaagaagttac
agccctagtccggagagggttcgaacatggggtagtagaagcagaagcagaagcagaagc
aggagtcgcagcaggagttatagcaggagttacagcagaagccgtagccgcagctatagc
cccaggcgtagccgcagctatagccgcagccgcagccgtagtcgtgatagatatcaaagg
aggcctcgccaaagtaagtttgatcagatggatccagatccaggaatgtcaagcgttcag
attgctcctccatccgtgatgcctccattgcctataggtgcgccagttgatggattttct
ggagctgcgtcagtggaatcaaaaccaaatatggaggtagccccagaatctggtatgtca
cctatgtctccaggaactcgaggaaatggcttgccaggatctgaggtcatagagcagaac
ccttga
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integrated database retrieval system
