Solanum dulcamara (climbing nightshade): 129887445
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Entry
129887445 CDS
T09577
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like isoform X1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129887445
04121 Ubiquitin system [BR:
sdul04121
]
129887445
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129887445
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
129887445
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129887445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-ANAPC11
zf-C3HC4_3
zf-RING_UBOX
Zf_IFT144_1st
zf-RING_5
DUF7129
Motif
Other DBs
NCBI-GeneID:
129887445
NCBI-ProteinID:
XP_055818525
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All DBs
Position
4:complement(56725749..56728111)
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AA seq
387 aa
AA seq
DB search
MDVACLTEKEDPMDERGASRYWCHHCSRRVNPMMEVELKCPICQLGFIEEMGADSTDREN
ESPLDSDSDRALSLWAPILLGMMSNPRSRSRLRHLEFEDDDDEYTNERDDHTREADTELD
PGLASIMNRRRRNSATILQLLQGIRAGMLSESENADNENRETGRESRDSERVILINPFNQ
TIIVQGSYDSDNNSRNQPIGSLGDYFIGPGLDVLLQHLAENDPNRYGTPPAQKEVVEALP
VVTIDETLQCSVCLEDFEIGTEAKEMPCKHKFHGVCILPWLELHSTCPVCRHQLPSDESK
VESAGTNDGSGNTNAQSSNGNGRRYEDEDTRNENGRRFPVSLPWPLSGLFSSSNAGIQSS
NGNSSSMTSSSSTLSGNANSNAHMHED
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgcttgtttgacagagaaagaagatccaatggacgaaagaggagcatcaaga
tattggtgtcatcattgttcaaggagggtgaaccccatgatggaggtggaattaaaatgt
cccatttgtcaactaggatttattgaagaaatgggagcagacagtactgatcgtgaaaat
gagagccctttagattccgattctgatcgtgccctctcactttgggcacctatcttgtta
ggcatgatgagcaaccctcgtagtcgttctagacttaggcatctcgaatttgaagatgat
gatgatgagtacacaaatgaacgcgatgatcatactcgtgaagccgatacagaactagat
ccggggctggcatctataatgaataggcggaggaggaactctgcgacaattctccagctc
ttgcaaggtattcgagctggaatgttgtctgagtcggagaatgctgacaatgaaaacagg
gagacaggtagagagagtagggatagtgaacgtgttatacttataaatccgttcaatcaa
accatcattgtgcagggctcttatgattcggataataattccaggaaccaacctattggc
tcattgggtgattattttattggtcctggtttagacgtgttgctgcaacatttggcagag
aatgatccaaataggtatggtactccaccagctcaaaaagaggttgtagaggcgttgccc
gtggtgacaattgatgagacattgcagtgttctgtctgtttagaagactttgagattggg
actgaagccaaagagatgccttgtaagcacaagtttcatggtgtctgtatcttaccatgg
ctggagcttcatagcacatgtccagtctgtaggcaccagttgccctctgatgaatcaaaa
gttgagtctgctggaaccaatgatggaagtggtaacacaaatgcgcagagtagtaacggt
aatggtagaaggtatgaagatgaggatactaggaatgaaaacgggcgacggtttccagtg
tcgcttccatggcctttgagtggcttgttttcatcctcaaacgcaggtatccaatctagt
aatggaaattcatcatcaatgacgtcttcttcatcaaccttgtcaggaaatgcaaactcc
aatgctcatatgcatgaggattaa
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