Solanum dulcamara (climbing nightshade): 129887648
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Entry
129887648 CDS
T09577
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129887648
04121 Ubiquitin system [BR:
sdul04121
]
129887648
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129887648
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
129887648
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129887648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
zf-RING_11
Zn_ribbon_19
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
CxC4
VPS18_RING_C
zf-Nse
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
129887648
NCBI-ProteinID:
XP_055818793
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All DBs
Position
4:complement(76976605..76979284)
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AA seq
318 aa
AA seq
DB search
MSSGSYTHWCHRCRQPIRPRGATCLCSNCGGGFVEELDDMVGTRSNIEDDPHFGLMDPFP
DPRFGIMDALSAFMRQRMAGRNPNFDIRTRSGIVPGSGRGFGSGPWLIFHGQTPVSMTEN
DAFEYFFSNGSPGMGHRRPNFDDLMGPGLQQLIEQLSMNDRQGPPPAPRSAIDALPTVRI
TQRHLNTDSQCSVCQDNFELGSEARQMPCKHLYHSDCIIPWLVRHNSCPVCRLELPSRAS
GSAPVNWSSGTGNVSSGSNSSSRENSSQNQGRRNPFSFLWPFRSSNQNTGNYAERGGGSS
STTPYEENNEANYPAWRF
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgggagctatacacactggtgccacagatgcagacagccaattcggcctcga
ggagctacttgtctttgctcaaattgtggcggaggtttcgttgaagagctcgatgacatg
gtaggtactagatctaatattgaggatgatcctcattttggattgatggatcctttcccg
gaccctagatttggtataatggatgccctttctgcgttcatgaggcagagaatggcagga
agaaatcctaactttgacattaggacaagatctggcattgttcccggaagtgggaggggt
tttggttctggtccatggttgatatttcatggccaaactcctgttagtatgaccgaaaat
gatgcatttgagtactttttctccaatggaagtccgggaatgggacatcggcgacctaat
tttgatgatttgatggggcctgggctgcaacagttaattgagcagctcagtatgaatgat
aggcaggggcctcccccggcacctcgctctgcaatagatgctttgcctactgtcagaatc
actcaaaggcacctcaacactgattctcagtgctcagtttgtcaagataactttgaattg
ggttctgaagcaaggcaaatgccatgtaagcatctttaccattcagattgtatcatacca
tggttggttaggcacaactcgtgccctgtttgccgtcttgagctgccttcacgagcttcc
gggagtgccccggtcaactggagttccggaactggaaatgtcagcagtggcagcaacagt
agtagcagggagaatagcagtcagaaccaggggaggaggaatcctttttcatttttgtgg
ccttttcgctcgtccaaccaaaacactggcaattatgctgagaggggaggaggaagtagc
tcaacaacaccctatgaagagaacaatgaagcaaattaccctgcttggcgcttttaa
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