KEGG   Solanum dulcamara (climbing nightshade): 129887650
Entry
129887650         CDS       T09577                                 
Name
(RefSeq) UBP1-associated protein 2A-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129887650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdul03019]
    129887650
   03041 Spliceosome [BR:sdul03041]
    129887650
Messenger RNA biogenesis [BR:sdul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     129887650
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     129887650
Spliceosome [BR:sdul03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    129887650
SSDB
Motif
Pfam: RRM_1 RRM_7 Rubis-subs-bind Cut8 RRM_Nup35
Other DBs
NCBI-GeneID: 129887650
NCBI-ProteinID: XP_055818797
LinkDB
Position
4:77016298..77020321
AA seq 490 aa
MAKKRKTRASEPSQPVEEPVEEIKQEPDAEPAQEEEYENDVVEQEEEETVHEEEEEEPDP
EEEDEDGGDDDDEEEIPGSGNDAVEGNNEKSEQVNGGAEVKMEEGNEEDLEDEPLEKLLE
PFTKDQLTALIKEALAKYPDFKESIQKLADKDPAHRKIFVHGLGWDTTAETLTSVFGIYG
EIEDCKAVTDKVSGKSKGYGFILFKHRSGARKALREPQKKIGTRMTSCQLASAGPVPAPP
PSSAVPPVSEYTQRKIFVSNVAADLEPQKLFEFFSKFGEVEEGPLGLDKQTGKPKGFCLF
VYKSVEGARKALEEPHKTFEGHTLHCQKAIDGPKHNKNFYQQQQPQSQQHYPQHHHNQPQ
YYHHPAKKGKYSGSSAGAGSAGHLMAPSGPAPVGYNPAVAAVTPALGQALTALLATQGAG
LGIGNLLGGLSGPVNHQGVPPVMSNATGYGAQGAAGGYGAQPHMQYQNPQMQGGARPQGG
GAPYSGYGGH
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggcgaagaagcgaaaaaccagagcttccgaaccctcacaaccagttgaagaaccagta
gaagagattaagcaagaaccggatgctgaacccgcacaagaagaagaatacgaaaacgat
gtcgttgaacaagaagaagaagaaacagtacatgaagaggaagaagaagaaccagatccc
gaagaggaagatgaagacggcggtgacgatgatgatgaagaagaaatacccggatctgga
aatgatgctgtagagggtaataatgaaaagtctgaacaagttaacggaggcgctgaggtg
aagatggaagaaggtaatgaagaggatttggaagatgagccacttgagaagctgttagag
ccctttacgaaggatcaacttacagcgcttattaaagaagctttagctaaataccctgat
ttcaaagaaagtattcaaaaattggctgataaagatccggcacaccggaaaatctttgtg
catggtttaggttgggataccacggctgaaaccctaacgagtgttttcggaatttacggt
gagattgaggattgtaaagctgttactgataaggtttcagggaaatcgaaaggttatggg
tttatattgtttaagcataggagtggtgctaggaaagctttgagagaaccacagaagaag
attggtacaaggatgacgtcttgtcagttggcttctgctgggccggttccggctcctcca
cctagttcagcagttccaccggtttcagagtatacacagaggaagatttttgttagcaat
gtagctgctgatcttgaacctcaaaagttgtttgagttcttctcaaagtttggtgaagtt
gaggagggtccgcttggattggataaacaaactggaaaacctaaggggttttgtttgttt
gtgtataagagtgttgagggtgctagaaaagcattagaggagccacataagacctttgaa
gggcatacccttcattgtcagaaggcgattgatggaccgaagcataataagaacttctat
cagcagcaacagcctcagtcgcaacaacattaccctcagcatcatcataatcagccacag
tattatcatcatcctgcgaagaaggggaaatattcaggtagcagtgcaggagcaggatca
gctgggcatttgatggcgccatcagggcctgcacctgtgggatacaatcctgctgtggca
gctgtgaccccagctcttggacaggcactgacagccctgttagctacacagggagctggt
ttggggattgggaatttgcttggaggtcttagtgggccagtgaatcatcagggtgtgcca
ccagtgatgagcaatgcaacaggatatggtgcccagggtgctgctggtggatatggagct
cagcctcatatgcaataccaaaacccgcagatgcagggtggtgcaagaccacaaggtggt
ggtgcaccatactcgggctatggaggtcattag

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