Solanum dulcamara (climbing nightshade): 129887731
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Entry
129887731 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129887731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129887731
03012 Translation factors [BR:
sdul03012
]
129887731
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129887731
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129887731
Translation factors [BR:
sdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129887731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
NACHT
AAA_19
Motif
Other DBs
NCBI-GeneID:
129887731
NCBI-ProteinID:
XP_055818914
LinkDB
All DBs
Position
4:complement(78614104..78623645)
Genome browser
AA seq
1030 aa
AA seq
DB search
MSVRLLNHPHSALLHFHFRNSLRSSAHRSYSFSRSAMSYRPNYRGGSRGGGGRGGGGGRG
GGGRGGGGGRGGEQRWWDPVWRAERLRHQAAEMEVMNENEWWGKMEQFKRGGDQEMVIRR
NFSRDDQQKLSDMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKEIRMSAE
IEERVGNLLSSSQDTVYVGTSSSTSGNSAKLSSKAVEKAKPNLTIEDDTATKRLNVELKQ
KQEKTRESEKVKAMISFRGKLPAFKVKSEFMEAVANNQVLVVSGETGCGKTTQLPQFILE
EEISSLRGVDCNIICTQPRRISAISVAARICSERGESLGDTVGYQIRLEAKRSAQTRLLF
CTTGVLLRRLVQDPDLTDVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI
NAELFSKYFRDAPTIHIPGLTYPVAELFLEDVLEKTRYLIKSEAENFQGNSRRRMRQQDS
KRDPLTDHFEDVDIGSHYKGYSLTTRQSLEAWSGSQLDLGLVEAAIEYICRCEGEGAILV
FLSGWDEISKLLDKIKANNFLGDTKKFLFLPLHGSMPTVNQREIFDRPPANTRKIVLATN
IAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCY
RLYPKLIHDAMAQYQLPEILRTPLQELCLHIKSLQFGAIESFLAKALQPPDALSVHNAIE
LLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRDPFV
LPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRYGKERTFCWENFLSPVTLQML
EDMRNQFVDLLSDIGFVDKSREAKAYNEYSNDLEMVCAILCAGLYPNVVQCKRRGKRTVF
YTKEVGKVDIHPASANANVHLFPLPYLVYSEKVKSSSIYIRDSTNISDYSLLMFGGNLTP
SKSGDGIEMLGGYLHFSASKSVLDLIKKLRGELDKILKRKIKEPRFDVSVEGKGVVAAVV
ELLHSQDIRY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgccttctaaaccatccacactccgcccttctccattttcacttccgtaac
tctcttcgttcatcagcccataggagttactctttctcccgttccgctatgtcttatcgt
ccgaattaccgaggcggtagccgcggcggcggaggacgcggtggcggaggaggacgtggt
ggcggtggtcgtggaggaggaggaggacgtggtggtgaacagagatggtgggatcccgta
tggcgtgctgaacgacttcggcatcaggcagctgagatggaggtgatgaatgagaatgag
tggtgggggaagatggagcagtttaagagaggtggcgatcaggaaatggttataaggcga
aattttagtagggatgaccaacagaagttgtctgatatggcttatcaattagaactttac
ttccatgcttataacaagggaaaggcacttgttgcaagcaaagtcccattgccaagctat
cgtgctgatcttgacgagcgtcatggatctacacagaaagagattaggatgtctgcagag
attgaggaaagagtcggaaatctattgagcagttcacaagacacagtatatgttggaact
tcctcttcaacatctggtaattctgccaaattatcatccaaagctgtagaaaaagccaaa
cctaatttgactatagaggatgatactgccaccaaaagacttaatgtggaacttaaacag
aaacaggaaaagacgagggaaagtgaaaaagtcaaggcaatgatctcattcagaggaaaa
cttccagcatttaaagtaaaatctgaatttatggaagctgttgcaaataatcaggtattg
gtagtttctggagagactggttgtggaaagacaacgcagctccctcaattcattctagaa
gaggagatatcatcccttcgtggtgttgattgtaacattatatgcactcagcctcgccgt
atatctgcaatatcagttgccgctcgaatatgctctgaaagaggagagagtcttggtgat
actgttggataccagatccggctggaagcgaagcgctctgcccaaacacggttgctattt
tgcacaacaggagtgttactgcggcggctggttcaggaccctgatttgactgatgttagc
catctgcttgttgatgaaatccacgaaagaggcatgaatgaagactttctcttgataatt
ttacgtgacctccttcctcgacgacctgatttgcgtctcattctgatgagtgctactatt
aacgctgagttgttctccaaatacttcagagatgcacccacaattcatataccgggtttg
acatatccagtggcagagctgtttcttgaagacgtgttggagaagactcgttaccttata
aaatctgaagcagaaaatttccaaggaaactcaaggagaaggatgaggcaacaagattct
aaaagagatcctctgactgatcattttgaggatgtggacattggttcacattataaaggc
tacagcttgactacaagacaatctctggaagcatggtctggttcacagcttgatttaggt
cttgtggaagcagcaattgaatatatctgtcgctgtgaaggtgaaggtgcaattcttgta
ttcctatctggttgggatgagatttctaagctacttgataaaattaaggctaacaacttc
cttggagacaccaagaagtttttattcctccctcttcacggttcaatgccaacagtaaat
caacgagaaatatttgatcgcccacctgctaacacgaggaaaattgttcttgcaaccaac
atagctgagagcagtataactatagatgatgtcgtgtatgtcatagactgtgggaaggcg
aaagagactagctatgatgcacttaacaagctagcttgtttattaccatcatggatttca
aaggcctcagcacatcagagacgtggtcgtgcgggccgggtacaacctggagtttgttat
aggttgtatccgaaactaatacatgatgctatggcacaatatcaactacctgagattctt
cgaacaccattacaagagctttgtctccatattaagagtttgcagtttggtgccattgaa
tcctttttggccaaggcacttcaacctccagatgctctctctgtccacaatgccattgaa
cttctcaaaactattggagctctggatgatacagaagaacttactccacttggccgtcat
ctttgcactctaccgctggatccaaatattggaaaaatgcttctgatggggtccatcttc
caatgtctgaaccctgcactgactattgctgctgctctggcacaccgtgatccatttgtc
cttccaataaacaggaaagaggaagcagatgctgctaaaagatcctttgctggtgattct
tgcagtgatcacattgcacttcttaaagcatttgaaggatggaaagatgctaaacgttat
ggaaaagaaagaaccttctgttgggaaaatttcttatctcctgtaaccttgcagatgctg
gaagacatgagaaatcagtttgttgacctactgtcagatattggttttgtggataaatca
cgagaagccaaggcatacaatgaatatagcaatgatttagagatggtatgcgccatcctt
tgtgcgggcctctacccaaatgtcgtacagtgtaaaagaagaggaaagcgtacagtattt
tacacgaaggaagttggaaaagttgatatccacccagcatctgctaacgctaatgttcat
cttttccctcttccctacttagtttacagtgagaaagtcaagagctcaagcatttatatc
agagattcaacgaacatatctgattattctcttcttatgtttgggggtaatctcactcca
agcaaaagtggagacggcattgaaatgcttggaggctatcttcacttttccgcatcaaaa
agtgtgttggatttaataaagaaactgcgaggggaactggataaaatcttaaaaaggaaa
atcaaagaaccccgctttgacgtttcagtcgagggaaagggtgtagttgctgctgtggtt
gagttacttcatagtcaagacatacggtactaa
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