Solanum dulcamara (climbing nightshade): 129887757
Help
Entry
129887757 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129887757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129887757
03012 Translation factors [BR:
sdul03012
]
129887757
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129887757
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129887757
Translation factors [BR:
sdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129887757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_16
ATPase
AAA_19
T2SSE
ABC_tran
PhoH
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
129887757
NCBI-ProteinID:
XP_055818947
LinkDB
All DBs
Position
4:complement(78943400..78963196)
Genome browser
AA seq
1168 aa
AA seq
DB search
MHSRVGFLLACTKRRSSTSTCSTVLLSTLFSSLHNRKIFAACHRRILIGSDVSKVYFFNE
SIFCGLGQLRGFCRYPGTAALEQFSDDEYECDYENHPASSSVANVDEWKWKLSLLLRNEK
DQEVVSRDKRDRRDYEQISNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVV
IPLSLQRRVEGLLQEHIDRTQLSSAKADIILDGTKSSDIVTNANMDENPDSFLDGAVMEK
VLQRRSLRMRNMQRGWQESPDGNKMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCG
KTTQLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLE
GVKGKNTHLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRP
DLRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRANFLEDVLEITGYKLTSFNQIDDY
GQEKMWKTQKQLAPRKKKNQITALVEDAVDKSNFENYSPRARDSLACWAPDCIGFNLIEA
VLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLVLTCHGSMATSEQKLI
FEKPPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASA
RQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLS
AALQPPESLAVQNAIQFLKMIGALDENENLTHLGKFLAILPVDPKLGKMLIMGAIFRCFD
PVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAY
EYCWRNFLSAQTLQAIHSLRKQFIFILKDAGLLDADTATNNKLSYNQSLVRAVICSGLYP
GISSVVHRETSMSFKTMDDGQVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGV
SDSIVILFGSTLDSGDMAGHLKMLGGYIEFFMDPTLADCYIKLKEELDMLLQKKLQDPEV
DIHKEGKYLMLAVQELVSGDQSEGRFVFGRENKKPKDSKDTDRFTRDGTNPKSLLQTLLM
RAGHSPPKYKTKHLKTNEFRALAEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQTSEKN
HDEDDKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgagagtagggtttctcttagcatgcacgaaaaggaggtcttctacatctact
tgttctacggttcttctatctactctattctcttctcttcataatcggaagatattcgcg
gcttgtcaccgccggattttgatcggtagtgatgtaagtaaggtttatttcttcaatgaa
tcgattttttgtggattgggacagctgcgtgggttttgtagataccctggtacagcagct
ttagagcaattctccgacgatgaatatgaatgcgactatgaaaatcatccggcttcgtca
tcagtggccaatgtagatgagtggaaatggaaacttagcctgctgttgcgcaatgagaag
gatcaagaagttgtatccagagataaacgggatagaagagactatgaacagatatccaac
cttgctaaaaggatgggtctctatagtgaaatttatgggaaagttgtagtggtgagcaag
gttcctcttcctaattacagacccgatcttgatgataaacggcctcaaagagaggtagta
atcccactaagtttgcaaaggagagtagaaggcttgctccaggagcatatagatagaaca
caactcagtagtgcaaaagctgacatcattttagatggtactaagtcctctgatatagtt
acaaatgcgaatatggatgaaaatccagattcattcttggatggcgctgtcatggagaag
gttcttcaaaggcggagcttacgcatgcgtaatatgcagaggggttggcaggaatctcct
gatggcaacaaaatgctagaattccggaaatctcttcctgcatttaaggaaaaggaaagg
ctgctccaagctattgcacgtaatcaggtggtagtaatttctggcgagacaggatgtggt
aagaccactcaactgccacagtacattctagagtcagaaatagaatctggccgtggagca
ttctgtagcataatttgtactcagcctcgaagaatatctgctttggctgttgcagaaaga
gtggctacagaaaggggagaacctcttggtgactcagttggttataaagtacgattagaa
ggggtgaaaggaaaaaatacgcatttgctattttgtacgagtggtattttgcttcgtcgt
cttctcagtgaccgcaatcttgacggtataacccatgttttcgttgatgaaattcatgaa
cgaggcatgaatgaagatttcctgttgattgtgttgaaggatcttcttccacgacgccca
gatttgagattgattttgatgagtgctactcttaatgctgaattattttccagttacttt
ggaggagcacctatgattcacatcccaggcttcacatatcctgtaagagcaaactttctg
gaagatgtgctggaaattacgggatataagttgacttcattcaaccaaattgatgattat
ggtcaggaaaagatgtggaaaacacaaaaacagttagcaccccgcaaaaagaaaaatcag
ataactgctcttgttgaggatgctgtagacaaatcaaacttcgagaattatagtccaagg
gcacgtgattcactagcatgctgggctcctgattgtattggattcaatcttattgaggca
gttttgtgccatatatgtcggaaagaacgtccaggtgctgtattagtatttatgactggt
tgggaagatattagttgtttaagagatcaacttaaagcacatcctctcttgggtgaccca
aatagggtgttggtgctcacttgtcatggttctatggctacctctgagcagaaactcata
tttgagaagccacctcagaatgtacgtaaaatagtacttgcaacaaatatggccgaggca
agtattactataaatgatgtggtctttgtggtggactgtggaaaagcgaaggagacaact
tatgatgcgctaaataatactccgtgcttattaccttcatggatttcacaagcttctgca
cgacaaagaaggggtagggctggccgtgtccaaccaggcgagtgctaccatttgtatcca
cgatgtgtgtatgaagcttttgctgaatatcaactacccgaactcctgagaactcctttg
aattctctttgcttgcaaataaagagtttgcaggttggaagtattgctgaattcctatca
gctgctcttcagcctccagaatctttggctgtgcaaaatgctattcagtttttgaagatg
attggtgcattagatgaaaatgagaatcttacacatctaggtaaatttttagcaatcctc
cctgtggatcccaagcttgggaaaatgctcattatgggtgctattttccgatgctttgat
cctgttttgactatagtggctggtcttagtgtacgggatccatttctattgcctcaagat
aaaaaagatttagcagggacagcaaagtccagattctcagccaaggactatagtgatcat
atggcgcttgtccgtgcatatgaaggatggaaagatgctgaaagggaaggttctgcctac
gaatattgctggaggaatttcctctctgcccagactcttcaagctatccattctcttaga
aagcaatttatcttcatcttgaaagatgctggattgcttgatgctgatactgcaactaac
aataaactaagttacaatcagtctttggttcgtgctgtcatatgttctggcttgtatcct
ggaatttcatcagtggtgcacagagagacatcaatgtccttcaagactatggatgacgga
caagtctttctttatgcaaattcagtcaatgctcgttatcaaacgattccatacccttgg
ctggtgttcggtgaaaaagtgaaggtcaatacagtcttcatacgtgattctactggagta
tctgattcgattgtgatcctatttggtagtactctagactctggagatatggctgggcat
ttaaagatgttgggtggatacatagagttcttcatggatcctactctggcggattgctac
ataaagctcaaagaggagctcgatatgcttttgcaaaagaagcttcaagatcctgaggta
gacatccacaaggaaggcaaataccttatgcttgctgttcaggagctggtttcaggagat
cagtctgagggcaggtttgtgtttggtcgtgaaaacaagaagcctaaagattctaaggac
actgatagatttacaagggacgggacaaacccaaagagtttgttgcaaaccctacttatg
agggccggtcactcccctcccaagtacaaaacaaagcatctaaaaacaaatgaatttagg
gcacttgcagagttcaagggaatgcaatttgtaggtaaaccgaagagaaacaaagctctt
gcagaaaaggatgctgcaatagaggcactagcatggttgactcaaacatctgaaaagaat
catgatgaagatgataaatctcctcctgatgtcaccgataacatgctgaaacttcttggt
aaacgcaggagatcaaagcgtcggtga
DBGET
integrated database retrieval system
