KEGG   Solanum dulcamara (climbing nightshade): 129888750
Entry
129888750         CDS       T09577                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
Organism
sdul  Solanum dulcamara (climbing nightshade)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase NAT10_TcmA_helicase NPHP3_N nSTAND3 ATPase PhoH SRP54 AAA_16 AAA_22 Ribosomal_S13_N AAA_25 AAA AAA_32
Other DBs
NCBI-GeneID: 129888750
NCBI-ProteinID: XP_055819719
LinkDB
Position
5:complement(2456580..2469189)
AA seq 1265 aa
MDSQPNNLYDTASQPDTGNDAYTFLEFNTQGEEFDYPEFQELSQPIRSSAWPTPSDSLVS
EVPDRPPSSSEASPSTKSRGGGGNSNVSSSSNQASVVDALAAGMSGLNFEETGDDEGFEY
GKGDFGVEHACKYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCL
HKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWC
PLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQ
PVALKYEDAYQYQNIFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVAYFVFPKE
DNELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRASQGVPVDVNHGLSV
DFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVEMQMVRNTLPRRFGAPGLPEL
NASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLA
EKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSS
SDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIP
LVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVFLGVKPIRLQVQYRMHPALS
EFPSNSFYEGTLQNGVTVNERLSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTE
AANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSF
QGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLL
THYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGAVQGDSFGSASGPVADR
RNSRPRGSYMAPGVPNGTQKPGVHPAGYPMPRVPFPPYHGGPPQPYAIPTRGAVHGPVGA
VPHVPQPGSRGFGAGRGNINAPIGSHLPHHQGSQQPVGSIGSNFNFPSLDNPNSQPSVGG
PLSQPGYASNMAIQGPGQSFRDGLSMGSMSQDFVGDDFKSQGSHVPYNVADFSTQASQGA
YAVDYVSQGAQAGFPGNFLNQNSQSGYSRFGSGNEFMSQDYMAHGSQGLFTQAGYNDPSQ
DDGSQNHFGMSNVNSLQSQSLLNPLYSQPFAHYNTQPLNLQSSQPQQQQRPQGQGFQNQK
LHYNS
NT seq 3798 nt   +upstreamnt  +downstreamnt
atggattctcagccgaacaatctctacgacacggcgtcgcagccggatactgggaacgac
gcatatacattcctggaattcaacacacaaggtgaagagtttgattatcctgaatttcaa
gagctttcacagccaattcgatcttctgcgtggccaacaccatcggattctctggtatca
gaagtacctgatcgacctccgtcgtcgtcggaagcgtctccgtcgacgaaatcacgaggt
ggaggtgggaatagtaatgttagtagtagtagtaatcaggcgtcggtggtggatgcattg
gcagcggggatgagtgggttgaattttgaagagacaggggatgatgaaggttttgagtat
ggaaaaggggattttggtgttgagcatgcttgtaagtactgtggagtgacgaatcctgct
tgtgttgttaggtgcaatgtgccatcttgccgcaagtggttctgtaattccagagggaat
acttcgggctcacatattgttaatcacctggtgcgagcaaaacacaaggaggtgtgtctt
cataaagatagtccacttggagaaacaattctagagtgctacaattgtggatgccgaaat
gtctttcttcttggcttcatttctgccaagacagagagcgtcgttgttctcctctgtaga
gaaccttgtctaagtgttaatgcattaaaggatatgaactgggacctgagtcagtggtgc
ccactcattgatgacaggtgctttttgcagtggcttgttaaggtcccttccgagcaagaa
cagttgagagcgcgccagatcagtgctcaacaaatcaacaaagtagaagaattgtggaag
acaaatcctgatgctaccctggaagatcttgagaagcctggtgtggatgatgagcctcag
cctgttgccttgaagtatgaagatgcctatcagtatcaaaacatatttgcaccattgatc
aagcttgaagctgactatgataagatgatgaaagagtctcaaagtaaagacaatcttact
attcgatgggatattggtctcaacaagaagcgtgttgcatattttgtgttcccgaaggaa
gataatgagttgcgtcttgtacctggtgatgagctaaggctacgatattcaggggatgca
gctcatccagcttggcaatccgtggggcacgtggtaaaattaactgctcaagaagaggtt
gcgcttgaacttcgtgccagccagggggttccagtcgatgtgaaccatgggcttagtgtt
gactttgtttggaaaagtacgagctttgatcggatgcagagtgcaatgaaaacctttgca
gtggatgagactagtgtcagtgggtatatttaccatcatctgttaggtcatgaagttgag
atgcagatggtccggaatacacttccacgtcgttttggtgctcctggtcttccggaactt
aatgcatctcaggtttttgctgtaaaaagtgttcttcaaaagcccatcagtttaattcaa
ggtccacctggaactggaaaaactgtcacctctgccgctattgtgtatcatatggcgaaa
caaggccaaggacaggttttggtctgtgcccccagtaacgtggctgtggaccaattagcc
gagaagataagtgctaccggtctgaaggtggttaggctctgtgccaagtcaagggaagct
gtcagttctcctgtcgagcatttaacccttcactatcaggttcgccatcttgacacatct
gagaagagtgaacttcacaagttacagcaactgaaagatgaacaaggagagctctccagt
agtgatgagaagaaatataaagctttgaagcgggcaacagagagggaaatagctcagagt
gctgatgtcatttgttgcacatgcgttggtgctggagatcctagattggctaatttcaga
ttccgccaggtgctcattgatgaatccactcaggctactgagcctgaatgtctcattccg
ttggttcttggtgcaaagcaggctgttcttgtcggtgatcattgccagcttggacctgtc
attatgtgcaagaaagcagctcgtgctggacttgctcaatctctctttgagcgccttgtg
tttctaggcgtgaagccaattaggttacaggtacaataccgtatgcatcctgcattgtct
gagttcccatcaaatagcttttatgaaggtacacttcaaaatggtgtaaccgtcaatgaa
aggctatcatcaggaattgattttccttggcctgtgcccaaccgtcccatgttcttctat
gttcagatgggacaagaggagatcagtgctagtggaacttcctatctgaatagaactgaa
gctgcgaatgtggagaagattgtgactacatttctgaagagtggggtagtccctagtcag
attggggtcataacaccatatgagggtcaacgagcatatattgtgaattatatggcaaga
aatggttctctaagacaacagctctacaaggaaattgaggttgcaagtgtagattcattt
caagggagggaaaaggattatattattttgtcttgtgtcaggagtaatgagcatcagggc
attgggttccttaatgatccacgtaggcttaatgttgctcttacccgtgctcgttatggt
attgttattctgggaaatcctaaagtcttgagcaagcagcctttgtggaatggcttgtta
acacactacaaggagcatgagtgcttggtagaaggtcctctcaataacttaaagcagagc
atggttcaatttcagaagcccaaaaagatctacaatgagcgcagactcttctttggtggt
ggacctggagcagttcaaggtgatagttttggatctgcttcaggccccgttgctgacagg
agaaatagtcgtcctaggggttcctatatggcacctggtgtacccaatggtactcagaaa
cctggtgttcatcctgctggttatccgatgcctcgggttccctttcccccttaccatgga
ggccctccacaaccgtatgcaattcctactcgtggtgctgtccatgggcctgttggagct
gttcctcatgttccacagccaggtagccggggttttggggctggacgtggcaacatcaat
gccccaattggtagtcatctccctcaccatcaaggctcccagcagccggtcggaagtatt
ggatctaacttcaactttccttcattagataatccaaacagtcagccttctgttggggga
cctttatctcaacctggatatgcttctaatatggctatccagggaccaggccagtcattc
cgggatggactttcgatgggtagcatgtcacaggattttgtgggagatgatttcaagagc
caggggtctcatgttccatataatgttgctgacttctctacacaggcttctcaaggtgca
tatgctgttgattatgtaagtcaaggagcacaggctggttttccagggaactttttaaac
cagaattctcaatctggatactcccgttttggttcaggaaatgaattcatgtctcaggac
tatatggctcatggttcacaaggtctatttacacaagctggatataatgatccatcacaa
gatgatggttcacagaatcattttggcatgtccaatgttaattcacttcagtctcagagt
ttacttaatccactttactcccagccatttgcgcactacaatacacaaccattgaacttg
caaagttcccagcctcaacagcagcaaaggccacaaggccagggcttccaaaatcagaaa
ctccattacaatagttga

DBGET integrated database retrieval system