Solanum dulcamara (climbing nightshade): 129889011
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Entry
129889011 CDS
T09577
Name
(RefSeq) guanine nucleotide exchange factor SPIKE 1
KO
K21852
dedicator of cytokinesis protein 6/7/8
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129889011
Membrane trafficking [BR:
sdul04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
129889011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHR-2_Lobe_A
DOCK-C2
DHR-2_Lobe_C
DHR-2_Lobe_B
Motif
Other DBs
NCBI-GeneID:
129889011
NCBI-ProteinID:
XP_055820084
LinkDB
All DBs
Position
5:complement(9808405..9867340)
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AA seq
1836 aa
AA seq
DB search
METSSSGYRFRRIPHHSFAGSLNLDPLLDENLEQWPHLNELVQCYRTDWVKDENKYGHYE
SVSPASFQSQIYEGPDTDIETEMHLANARRPKIEDSIDGEIPSTSRTQLPEDNFSDLSNA
KVSKHFGESPLPTYEPVFDWENERSLIFGQRIPEAHMSQYTSGLKIAVKVLSLSFQAGLV
EPFYGTICLYNRERREKLSEDFIFHVLPTEMQEASSSYERRCIFHLDAPSASICLLIQLE
KPATEEGGVSPSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFSWAIIPLFDSNIASMGG
SASPSSPLAPSVSASSSQEGITEPLSKITADGKLGYSNGNSIVVEVANLNKVKEGYTEES
LQDPKRKVHKPVKGVLKLEIEKLPASSAEAEIALESGSLIYDSLDHGDHLNDSTSMSCPT
NGSFSKSKSSEMKELVRNGSVAHENVENTADDFEAFDFRTTTRNEPFLQLFHCLYVYPLT
VSMSRKRNMFIRVELRRDDTDIRKPPLEAMHPREPGVPLQKWSHTQVAVGARVASYHDEI
KVSLPAIWTPSHHLLFTFYHVDLQTKLEAPKPVVIGYASLPLSTHAQFRSEISLPIMKEL
VPHYLQESGKERLDYLEDGKNIFKLRLRLCSSLYPVSERIRDFFLEYDRHTLRTSPPWGS
ELLEAINSLKNVDSTALLQFLYPILNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVD
EAERNAFLVNFVDYSFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWF
FLELIVKSMALEQARSFYHNLPSGEDVPPMQLKEGVFRCVVQLYDCLLTEVHERCKKGLS
LAKHLNSSLAFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQTVLHDCKLTFLQIICDHDL
FVEMPGRDPSDRNYLSSILIQEIFLTWDHDDLSMRAKAARILVVLMCKHEFDIRYQKLED
KLYIAQLYFPLVGQILDEMPVFYNLSTVEKREVLIIFLQIVRNLDDESLVKAWEQSIART
RLFFKLLEECLMHFEHRKPADGMLVGNSSRSVIGDGPASPKYSDRLSPAINHYMSEAARQ
EVRGTPDNGYLWQRVNSQLSSPSQPYSLREALAQAQSSRIGASALALRESLHPILRQKLE
LWEENLSAAVSLQVLEVSEKFSRTAATKRIATDYGKLDCITSIFMNVFSRNQPLSFWKAL
FPVFNSVFELHGATLMARENDRFLKQIAFHLLRLAVFRNDNIRKKAVIGLQILIRSSFSY
FMQTGRLRVMLTITLSELMSEVQVTQMKPDGTLEESGEARRLRNSLDEMEDEAKSSSLLV
ESGLPQNALAAVPEGSSENRWSWSEVKFLSESLLMALDASLEHALLGSVMNVDRYAAAES
FYKLAMAFSPVPDLHIMWLLHLCEAHQEMQSWAEAAQCAVAVAGVVMQALVCRNDGVWSK
DHVSALRKICPMVSSDITSEASAAEVEGYGSSKLTVDSAVKYLQLANKLFHQAELFHFCA
SILELVIPVNKSRKAYGQLAKCHTTLTNIYESILEQESSPIPFTDATYYRVGFYGEKFGK
LDRKEYVYREPRDVRLGDIMEKLSHIYESRMDGTTLHVIPDSRQVKADELQPGVCYLQIT
AVDPVMEDEDLGSRRERIFSLSTGSVRARVFDRFLFDTPFTKNGKTQGGLEDQWKRRTVL
QTEGSFPALVNRLLVTKSESLEFSPVENAIGMIETRTAALRNELEEPRSSEGDQLPRLQS
LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKRAIRVHF
RLIGEEDQDFHTQLVNGFQSLTAELSHYIPAILSEL
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggaaacttcatctagtggatatcgatttcggagaataccacaccactccttcgctggt
tccttgaatttagatccgctgcttgatgaaaatttggagcagtggccacatttaaatgaa
cttgtgcaatgctacagaaccgactgggtaaaagatgagaacaagtatggtcactatgaa
agtgtcagcccggcttcatttcagagtcaaatatatgagggtcctgatactgatattgaa
acagagatgcatcttgcaaatgctaggcggcctaagattgaagattcaattgatggtgaa
atccccagcacttctcggacacaactccctgaagataatttctctgacctctcaaatgcc
aaagtctccaagcattttggtgaatcccctctaccgacttatgaaccagtttttgactgg
gaaaatgaaagatcattaatatttgggcaaaggattcctgaagctcatatgtcccagtat
acgagcggtctgaagattgccgtgaaagtcctatcattgtcatttcaagctggactagtt
gagccgttttatggcacaatttgtttatataatagggaacgaagagaaaaactttcagag
gattttattttccatgtattgcctactgaaatgcaagaagcaagtagttcctatgaaagg
cgttgcatttttcatctagatgctccatcagcatctatttgtctgctaatccaactagaa
aaacctgccactgaagaaggtggagtgtctccttctgtttattcacgaaaggaaccagtt
catcttacagagagagagaaacagaaactacaagtatggtcgcggatcatgccttacagg
gagtccttttcctgggccatcattccactctttgatagtaacatagcttctatgggtggc
tctgcttctcccagcagccctcttgctcccagcgtctctgcatcaagttcacaagagggt
atcactgagccactttcaaaaattacagcagatggaaagcttggttattccaatggaaac
tccatcgttgttgaagtggctaacttaaacaaagtcaaagaaggatacactgaggaatct
ctccaggatccaaagagaaaggttcataaaccagtaaaaggtgtcttgaaattggaaatc
gaaaagctgccagctagctctgctgaagctgaaattgctttggagagtggtagtttgatc
tatgattctcttgatcatggcgaccatttgaatgattcaacttctatgagttgccctact
aatggttccttttccaagtctaaatcctctgagatgaaagagcttgttcggaatggttca
gttgctcatgaaaatgtggaaaatactgctgatgattttgaagcttttgacttccgcaca
acaacaaggaatgaaccattcttgcagctctttcactgcttatatgtctatcccttgact
gttagtatgagtcggaaacgaaacatgtttatacgtgttgaactgagaagggacgacaca
gatattcgaaaaccgcctctagaggctatgcatccaagggaaccaggtgtaccacttcag
aaatggtctcacacacaagttgctgtgggggcaagggtggccagctaccatgatgagatc
aaagtttctttgcctgctatttggacaccatcacatcaccttttgtttactttctatcat
gttgatcttcagacaaaacttgaagcaccaaagccggtggtaattggatacgcttcactt
ccattgtcgacacatgcgcagttcagatctgagatatccttgccaatcatgaaagaattg
gttcctcactatctacaagaaagtggcaaggagaggctggattacttggaagatggaaag
aatatcttcaagcttcgtttacgactatgttcatcattatacccagttagtgagcgcatt
agggattttttccttgagtatgataggcatactctacggacaagccccccttggggatct
gagcttcttgaggcaatcaatagcttgaagaatgttgattccactgctttgcttcaattt
ctttatccaatcttaaacatgcttctccatcttattggcaatgggggggaaactcttcag
gttgctgcctttagagctatggttaacattttaacaagggtgcagcaagaatcggttgat
gaagctgagagaaatgctttcctggtcaactttgttgattattcttttgatgattttggg
ggccgccagccgccagtgtatcctggtttgtccacagtgtggggaagtttggctcgcagt
aaggcaaaaggataccgtgttggacctgtatatgatgatgtcctggcaatggcttggttt
tttcttgagttaattgtcaagtcaatggcactggagcaggctcgatcgttctatcacaat
cttccatcgggtgaagatgtcccaccaatgcaattgaaagaaggtgtttttagatgtgtt
gttcaattgtatgattgccttttaacagaagttcatgaacgctgcaagaaaggtctaagc
ttggccaagcatttaaatagtagtttggctttcttttgttatgatcttttatccatcatc
gagcctcgtcaggtttttgaactggtgtccttgtacctcgataaattctctggagtgtgt
caaacggtgctgcatgactgcaagcttacctttctacaaattatatgtgatcatgatctt
tttgttgaaatgccgggacgagatccttctgataggaactatctttcatccatcttaatt
caagagattttccttacatgggatcatgatgacttgtcaatgagggcaaaagctgcaaga
atcttggtggtcctcatgtgtaagcacgagtttgatattcgctaccaaaagctagaggat
aaattatatattgctcaattatattttccgcttgttggccagatcctggatgagatgcct
gtcttttacaatctgagtacagttgaaaagcgtgaagtcttgattatctttctgcaaata
gtgcgcaacttggacgatgaatcacttgttaaagcttgggagcagagcattgcccggacc
agattattctttaaacttttagaagagtgcttgatgcattttgagcataggaaacctgct
gatggcatgcttgttggtaatagttctcgtagtgtgataggggatggacctgcatcccca
aaatattctgacagactttcacctgcaattaaccactatatgtctgaggcagcaaggcaa
gaagtcagaggaactccggataatggttatttgtggcagcgggtcaactcccaattaagc
tcgcctagtcagccatattctttgagagaagccctagctcaagcccagtcctccagaatt
ggagcttcagcactagctttaagggaatcattgcatccaatcttaaggcaaaagctggaa
ctttgggaggagaacctgagtgctgctgttagtcttcaagttttagaagtttctgagaag
ttctcacggactgccgcaactaagcgtattgctactgattatggaaaacttgactgtatc
acatccatatttatgaatgtgttctcacgaaatcaaccactctccttctggaaagcacta
tttcctgtcttcaacagtgtctttgagcttcatggagctacattgatggcaagagaaaat
gatcgtttcttgaagcaaattgctttccaccttcttcggcttgcagtgtttcgaaatgac
aatatcaggaaaaaggctgtaattggactacagatacttattcggagctcgttctcttat
tttatgcagactggaagattaagagtgatgctaaccattacattgtcagagttaatgtct
gaagttcaagtaacacaaatgaaacctgatggaacgctagaagaaagtggtgaagctcgt
cgtcttcgaaattctttggacgaaatggaagatgaggctaagagttcctccttgttagtg
gagtctgggctcccacaaaatgcactggctgctgttccagaaggatcatcagaaaatcgc
tggtcctggtctgaggtgaaatttctttctgagagtcttcttatggctcttgatgccagc
ctggaacatgctcttctgggttctgttatgaatgtcgacaggtatgcagctgcagagagc
ttttataaactagcgatggcattttctcctgtaccagatcttcacataatgtggttactg
catctttgtgaagctcatcaggaaatgcagtcttgggctgaagctgctcaatgcgctgtt
gctgttgccggtgtagtgatgcaggcccttgtgtgtaggaatgatggtgtctggagcaag
gatcatgtgagtgcattacgcaaaatatgccccatggtcagcagtgacatcacttctgag
gcttcagcagctgaggtggagggatatggttcttcaaaactcacagttgactcggctgtg
aagtatttacagcttgcaaataagcttttccatcaggctgagttgttccatttctgtgca
agcattctagaacttgtaatcccagtaaataaaagcaggaaggcatatggacagcttgca
aaatgccacacaacgcttactaatatctacgagtccatccttgagcaggagtcaagccct
atacctttcacagacgccacatattatagagttggattttatggtgagaagtttgggaag
ctggacaggaaagaatatgtttatagagagcctcgtgatgtgcgattaggtgacataatg
gagaaattgagccatatctacgagtcgagaatggatggaactacattgcacgtaattcct
gattcgagacaagtcaaagcagatgagttgcagcctggagtctgctacctgcaaataact
gcagttgatcccgtgatggaggatgaagatttaggaagcagaagggaaaggatattctct
ctctctacgggaagtgtccgtgctcgagtctttgatcggtttttgtttgatacccctttc
actaaaaatggaaagacccaaggaggcttggaagaccaatggaagcggcgaacagttctg
caaactgagggatcttttcctgcactagtgaatcgactcttggttaccaaatcagaatcc
ctcgagttctccccagttgagaatgcaattggaatgattgaaactaggacagctgcatta
aggaatgaactagaagagcctcgaagctcagaaggcgatcaacttccacgtttgcagagt
ttacagaggattcttcaaggctcagttgcagttcaagttaacagtggagtcctcagcgtc
tgtacagctttcctttctggtgagcctgcaactaggttgcgttcgcaggagctacaacaa
cttattgctgcccttcttgaatttatggctgtgtgcaaacgtgctattcgagtacacttc
aggttgatcggagaagaagatcaggattttcatactcagcttgtaaatgggttccagtct
ctcactgctgaactatcacattatattcctgcaattctttcagagctttag
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