Solanum dulcamara (climbing nightshade): 129889146
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Entry
129889146 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03015
mRNA surveillance pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129889146
09122 Translation
03013 Nucleocytoplasmic transport
129889146
03015 mRNA surveillance pathway
129889146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129889146
03041 Spliceosome [BR:
sdul03041
]
129889146
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129889146
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129889146
Spliceosome [BR:
sdul03041
]
Complex C
Other components
EJC/TREX
129889146
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129889146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
129889146
NCBI-ProteinID:
XP_055820304
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All DBs
Position
5:complement(39270216..39277940)
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AA seq
427 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKISDSATKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIESVAGQVASLVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILAL
ARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTCYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaacgatgcttatgaggaggagcttctcgactatgaagaagat
gacgaaaaaatttctgattccgccacaaaagtcaacggcgagtcggccaaaaagggttat
gttgggattcacagttcaggtttcagagactttcttctaaagccagagttgttgcgtgct
attgtcgattctgggttcgagcatccttccgaagtgcaacatgagtgcattccacaagct
attctgggaatggatgtcatttgccaagctaaatctggaatgggaaaaaccgctgttttt
gtcctttcaactctgcaacagattgaatcggttgctggtcaggttgcttccctggttcta
tgtcacactagggaattagcttatcagatctgtcacgagtttgagagattcagcacttat
ctgcctgatatcaaggttgctgttttctatggtggtgtcaacatcaagctccacaaagag
ctgctgaagaatgagtgccctcatattgttgttggaactcctggaagaatacttgcattg
gcaagagataaggacctgtctttgaggaatgtgaggcattttatactagatgaatgtgac
aagatgcttgaatcacttgacatgcggagagacgtgcaggaaatcttcaagatgactcct
catgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtttgc
aagaaattcatgcaagatccaatggaaatttatgttgacgatgaggccaagttgaccctg
catggacttgtacagcactacatcaaattgagtgaaacagagaaaaaccggaagctgaat
gacctattggatgctttggacttcaaccaagttgttatttttgtcaagagtgtgagcaga
gcagcagagttgaacaagttacttgtggagtgtaattttccatctatctgcatccactct
ggcatgagtcaagaagaaagactgacatgctacaagggtttcaaggaagggcacaagaga
attctagtggcaactgatttggttggtagaggcatagacattgaaagggtgaacattgtt
attaactatgacatgccagattctgcagatacttatcttcatagagtgggaagagctggt
agatttggaactaaagggcttgccataacttttgtgtcatctgcatccgattctgaagtt
cttaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagatcgat
acttctacatatatgccatcttaa
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