Solanum dulcamara (climbing nightshade): 129889281
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Entry
129889281 CDS
T09577
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129889281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129889281
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129889281
Enzymes [BR:
sdul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
129889281
Messenger RNA biogenesis [BR:
sdul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
129889281
Transfer RNA biogenesis [BR:
sdul03016
]
Prokaryotic type
tRNA degradation factors
129889281
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Prd_NiFe_hyd_3_EhaI
Motif
Other DBs
NCBI-GeneID:
129889281
NCBI-ProteinID:
XP_055820491
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All DBs
Position
5:60503796..60507089
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AA seq
906 aa
AA seq
DB search
MFANPSFHGRPLQFVPTVRNELCRSYACPLQLHNRSYQFLASSTLENRRKRSRCRNGSPS
FTQFSIRASVEPPQDVFVLAPEVPGSPSPFSVRIPVGDRHITVETGLIGRQASGAVTIRD
GETIVYTTVCLADVPSEPADFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLI
DRPLRPTMPKGFYYETQLLSWVLSYDGLHPPDALSVTAAGIAMALSQVPNSQVIAGVRIG
LIDDKFVLNPTIKEMENSKLDLLLAGTKDAILMIEGYCDFLPEDKLLEAVEVGQDAVRGI
CKEVETLVQKCGKPKMFDAIRLPPKELYNLVEEIAGSELVEVLQIKNKIPRRKALSSLEE
NVISILSEKGYISTMEAFGSTETMPDLLEEEDEDEEVVIDGEVDEGDIHIKPVARKTVPL
LFSEVDVKLVFKEVTSKFLRKQIVDRGKRSDGRSPQEIRSIDARCGLLPRAHGSALFTRG
ETQSLAVVTLGDKQMAQKIDNLVDEDEYKRFYLQYSFPPSCVGEVGRVGAPSRREIGHGT
LAERALEPILPPEDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIA
MGMVLDTKEFGGDGTPLILSDILGSEDASGDMDFKVAGNDVGITAFQMDIKVGGITLSIM
KQALLQAKDGRKHILAEMSKCSPPPSRELSKYAPLIHVMKVKPEKINLIIGAGGKKVKSI
IEETGVEAIETQDDGVVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSVAPYGV
FVEIVPGREGLCHISELSANWLAKAEDAFKVGDRLDVKLIEINDKGQLRLSRRALLPDAE
TEKQSTKPRSASLSNDNVVSPKTSDKGKPKKAATVSKESEGPLKENTVPVNVTSPAKEAA
KRSVSP
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccaaccctagcttccatggccgacctctgcagttcgtacctacagttcgcaat
gaactatgcaggtcctacgcttgccctctacagctacacaacagaagctatcagtttctt
gcttcctcaacactggaaaacaggaggaagagaagccgatgccgaaacggaagtccaagt
tttactcaattctccataagagcttcagttgagcctcctcaggacgtgtttgttttagct
ccggaagttccaggttctccctccccattctctgttcgaattcccgttggcgatagacat
ataacggttgagacaggtcttataggaagacaagctagtggcgctgttacaattagagat
ggagaaactattgtctatacaactgtttgtttagctgatgtaccaagtgagcctgctgat
tttttcccactttctgttcattatcaagaacgtttttctgcagctggtaggactagtggg
ggattttttaaaagggaagggaggacaaaagatcatgaggttctaatttgtagattgata
gataggcctttacgtccaaccatgcctaaggggttttactatgaaactcaactactttca
tgggtattaagttatgatggtttgcatccaccagatgcattgtcagttacggctgctggt
attgctatggctttgtcacaagtaccaaattcacaagttatagctggagttcgaattggt
cttattgatgacaagtttgtcctgaatccaaccattaaggaaatggaaaactccaagttg
gatttgttactagcagggaccaaagatgcaatattgatgattgaggggtactgtgatttc
cttccggaggataagttgcttgaagctgtagaagttgggcaggatgctgtgcggggtatc
tgtaaggaggtggaaactttagtgcagaaatgtggaaagcctaaaatgtttgatgcaatc
agattacctcctaaagagctgtataacctagtcgaagaaattgctggcagtgagttagtg
gaagttctacaaattaaaaacaagattccaagaagaaaggcgttatcatcattggaagaa
aatgtaataagcatattgtctgagaagggttatatcagtacaatggaagcttttgggtca
actgagacgatgccagatttgctagaggaggaagacgaagatgaagaagtggtgattgat
ggtgaagttgatgagggtgatattcacataaagccagttgcaagaaaaactgtgccatta
ctgttctctgaggtggacgtgaagctggtatttaaggaagttacttccaaatttttgcgg
aaacagattgtggacagaggtaagagaagtgatggaaggagccctcaggagatacgatcg
attgatgcacgctgtggcctgcttcctagggcacatgggagtgctctcttcactcgaggt
gaaacacagtcattggcggtggtaacacttggagataagcaaatggcacagaagatagac
aaccttgtggatgaagatgaatacaagagattttatcttcagtactcatttccaccctcg
tgcgttggtgaagttgggagagtaggggccccatctagaagagaaattggtcatggaacg
cttgcagagagagcactagaaccaatactgcctcctgaagatgacttcccttacactgtt
cgtgttgagagtaccatcactgaaagcaatggctcatcgagtatggcatctgtatgtggt
gggtgcttagctttgcaagatgccggtgttcctgttaagtgttctattgcaggtattgcg
atgggtatggttctggacacaaaggaatttggtggagatggaactccactcatcctttca
gacatattgggttctgaagatgcatcaggggatatggatttcaaggttgctggaaatgat
gttggtattacagcatttcagatggacataaaggttggaggaattacactgtcaatcatg
aaacaagctctcttacaagcaaaagatggtcgaaagcacattcttgctgagatgtcaaaa
tgctcgccacccccttcaagagaactgtcaaaatatgctccactcatccatgttatgaag
gttaaaccagaaaaaataaacctaataattggcgccggtggaaagaaggtgaagagcatt
attgaagaaactggtgttgaagctattgaaacacaagatgatggtgtggtgaaaataact
gcaaaggatttgtcaagcctggaaaagtcaaaagccatcataagtaatctaacaatggtt
ccaactgttggtgacatatataggaattgtgaaattaaatctgttgcgccttatggtgtt
tttgtggagatcgtgcctggacgagagggattatgccatatcagtgagctgagtgcaaat
tggctagccaaggctgaagatgctttcaaagttggagaccgcctggatgttaagctcata
gagatcaatgacaaggggcaacttcgcttaagtcgacgtgcattacttccagatgctgag
accgagaaacaaagtacaaagccacggagtgctagcctttcaaatgacaatgtagtttca
ccaaaaacgtcagacaaaggtaaacctaagaaagctgcaactgtatcaaaggagagtgag
ggtcctctgaaggagaacacagttcctgtcaatgtaacaagcccagcgaaagaagcagcc
aagagatcagtaagtccgtaa
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