Solanum dulcamara (climbing nightshade): 129889529
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Entry
129889529 CDS
T09577
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129889529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129889529
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129889529
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129889529
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129889529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
129889529
NCBI-ProteinID:
XP_055820828
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Position
5:complement(69670258..69688177)
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AA seq
395 aa
AA seq
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MYYLPLSFDWRLHFLLLFLVYNIYRAIRFTKMSRTPAPLSPKFVPAEKSEITSVSKSDGF
KFSLVSYNILAQAYVKGTLFPHSPGPCLKWNVRSQAILKVLKSLGADFLCLQELDEYGSF
YKRNIECVGYSSIYVQRSGKKRDGCGIFYKQDSAELVIEENIEYNDLVPSIQDDTSSEDK
EENLPAGGNKNLASKDASLKNSGADHGDLNDPCVRFKRDCVGIMAAFRLKDPCHFIIVAN
THIYWDPELADVKLAQVRYLLSRLAQFKLRVSDKFDCSPSVIVAGDFNSLPGDQVYQYLI
SGSSEVGTLPESSDDVPIPLCSVYASTRGEPHFTNCTPGFTETLDYILFSPSGDIKPVSY
LELPEPEASDVQGGLPNYYHPSDHLPIGAEFEIVQ
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtattatctccctttaagttttgattggagacttcattttcttcttcttttcttggtt
tacaatatctacagagcaattcgtttcaccaaaatgagcagaacacctgcacctctgtct
ccaaaatttgttcctgctgaaaagagtgaaattacttcagtaagtaaatcagatggtttt
aagttcagtttggtatcgtataacattttggctcaggcatatgtaaagggtactctgttt
ccacactccccagggccttgtctcaagtggaacgtccgttcacaggcaatcctgaaagtt
ctcaagagcctcggggctgatttcctttgcttacaggaattggatgaatatggtagcttc
tataaaagaaatatagagtgtgttggctattcaagtatctatgtccaaagaagtgggaag
aagcgtgatggatgcgggatcttttataagcaggatagtgcagagttggtcattgaagag
aatatagagtacaatgatcttgtaccctcaattcaagacgatacttcttctgaggataaa
gaggagaatttgcctgctggtggtaataaaaatttagcgtcaaaagatgccagtttgaaa
aacagtggagcagatcatggagacctaaatgatccttgtgttagatttaaacgtgactgt
gtgggtattatggctgccttcaggctgaaggatccttgtcattttatcattgtggccaac
actcacatttactgggatccagaattggccgatgtcaaacttgcacaagttcgatacttg
ctttcacgcttagctcaattcaagttacgagtatcagacaaatttgattgctctccttct
gtgattgttgctggtgatttcaactccctccctggggatcaggtttatcagtaccttatt
tcaggttcgtcagaagtgggaactttgccagaaagctcagatgatgtgcccattccattg
tgcagtgtatatgcaagtactagaggagaaccacacttcacaaactgcactcctggattt
actgaaactctagattacatactattttcaccttctggggacatcaagccagtcagctac
ctcgaacttccggagcccgaagcatcagatgtacaaggtggcctaccaaattactatcat
cctagtgatcatctcccaattggtgctgaatttgaaatagttcagtag
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