KEGG   Solanum dulcamara (climbing nightshade): 129889997
Entry
129889997         CDS       T09577                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03030  DNA replication
sdul03410  Base excision repair
sdul03420  Nucleotide excision repair
sdul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129889997
   03410 Base excision repair
    129889997
   03420 Nucleotide excision repair
    129889997
   03430 Mismatch repair
    129889997
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdul03032]
    129889997
   03036 Chromosome and associated proteins [BR:sdul03036]
    129889997
   03400 DNA repair and recombination proteins [BR:sdul03400]
    129889997
DNA replication proteins [BR:sdul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    129889997
  DNA Replication Termination Factors
   ELG1-RFC complex
    129889997
Chromosome and associated proteins [BR:sdul03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    129889997
DNA repair and recombination proteins [BR:sdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     129889997
  Check point factors
   HRAD17(Rad24)-RFC complex
    129889997
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 nSTAND_NTPase5 AAA_22 Mg_chelatase AAA_lid_RFC1 AAA_16 Rad17 Viral_helicase1 RuvB_N AAA_5 AAA_11 nSTAND3 AAA_19 AAA_28 AAA_25 ABC_tran MeaB bpMoxR RCF1-5-like_lid AAA_24 IstB_IS21 AAA_assoc_2 AAA_30 AAA_18 DNAX_ATPase_lid NTPase_1 RNA_helicase DO-GTPase1 AAA_3 AAA_7 KTI12 SRP54 DNA_pol3_gamma3 AAA_29 SLFN-g3_helicase
Other DBs
NCBI-GeneID: 129889997
NCBI-ProteinID: XP_055821461
LinkDB
Position
5:complement(77096785..77100842)
AA seq 331 aa
MASSSSTSSGPEIPWVEKFRPTKVSDIVGNEDAVARLQVIARDGNMPNLILAGPPGTGKT
TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGRHKIIILDEA
DSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFARLSDQEILGRLM
AVVAAEKVAYVPEGLEAIIFTADGDMRQGLNNLQATHSGFGFVNQENVFKVCDQPHPLHV
KNMVRNVLEGKFDDACAGLKALYDLGYSPTDIITTLFRIIKNYDMAEYVKLEFLKETGFA
HMRICDGVGSYLQMCGLLAKLSLVRETAKAA
NT seq 996 nt   +upstreamnt  +downstreamnt
atggcatcttcttcttcgacatcatctggcccggaaatcccttgggttgagaagttccga
cccaccaaggtatccgacatcgtcggcaacgaagatgctgtcgccaggctccaagttatt
gctcgtgatggaaacatgcccaatcttattttagccggtcctccgggtactggcaaaacc
actagtatattggctcttgctcatgagcttttgggaccaaactataaggaggctgtcttg
gagctaaatgcatcagatgatagaggcatcgatgttgttagaaacaaaatcaagatgttt
gctcagaagaaagttactctaccctccggtcggcacaaaataattattttggacgaggct
gacagcatgacatctggagctcagcaagcactgaggaggacaatggaaatatattcgaat
tccactcgctttgctcttgcttgcaacacttcttctaagattatcgagcctattcaaagt
agatgcgccctggtccgatttgcaagattatctgaccaagagatccttggacgccttatg
gctgtagttgcagcagaaaaggttgcttatgtacctgaaggtcttgaagctattatattt
actgctgatggagatatgagacagggcttaaataacttacaagcaacacacagtggattt
ggttttgtcaaccaagagaatgttttcaaggtttgtgaccaacctcatccgttgcatgtg
aagaatatggtgcggaatgtccttgaagggaaatttgatgatgcatgtgccggtctaaag
gcactgtatgacctgggatattcccccactgacattatcacgaccctcttccgaatcata
aagaactatgatatggcagaatatgttaagctggaattcttgaaggaaactggtttcgcc
cacatgaggatctgtgatggggttggttcatatctccagatgtgtggtctgctggctaaa
ctatcattggttcgagaaacagctaaggctgcatga

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