Solanum dulcamara (climbing nightshade): 129891197
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Entry
129891197 CDS
T09577
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129891197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129891197
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129891197
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
129891197
RNA polymerase I system
129891197
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
129891197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW2_Spt5
KOW4_SPT5
KOW7_SPT5
KOW
Spt5_N
KOWx_SPT5
KOW5_SPT5
DUF4438
GPKOW_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
129891197
NCBI-ProteinID:
XP_055822448
LinkDB
All DBs
Position
6:complement(3536316..3555780)
Genome browser
AA seq
1043 aa
AA seq
DB search
MPRNRDYDDDDEPEEEEEDVYEEEDVDEEEEDDDRGKSGRKRRRSDFIDDAAEEDDDEDE
DDDDEDYGGGGGGGGGGGRRRPKRRTGSEFFDLEAAVDSDEDEEEEEGEDDFIVDSGADI
PDDDGARREYRHRLLPHEDQEEDLEELTRSIKQRYARSPHVEYDEEATDVEQQALLPSVR
DPKLWMVKCAIGREREVVVCLMQKAIDRGPELQIRSVVALDHLKNYIYIEADKEAHVREA
CKGMRNIYASAKIMLVPIKEMTDVLSVESKAVDLARDTWVRMKMGTYKGDLAKVMDVDNV
RQKVVVKLIPRIDLQALANKLEGREAPKKKAFIPPPRFMNIDEAREMNLRVERRRDPMSG
DYFENIGGMMFKDGFLYKTVSMKSISTLNIQPTFDELEKFRQTGEGGDGDMASLSTLFAN
RKKGHFMKGDRVIVVKGDLRNLKGHVEKVEEDTVHIRPNQKDLPLQTLAFSDKELCKYFD
LGNHVKVVSGSSEGATGMVVSVQGHVVNLVSDTTKELLRVFADNVVESSEVTSGLTRIGE
YELHDLVILDNKSFGVIIRVDSEAFQVLKGVPDRPEVALVRLREIKAKVEKKGNAHDRYK
NHLAVKDVVKVLEGPCKGKQGPVEHIFRGVVFIYDRHHLEHAGFICAKTQSCVLVGGSRA
NGDRNGNSLSSRFAHMRAPPRAPQSPMRSSRGGPPMSYGGRHRGGRGHDALVGADVKIRL
GPFKGCKGRVVDIKGTSVRVELEAQMKVVTVDRNHISDNVNVSTPFREPSRYGLGSETPS
HPSRTPLHPFMTPMRDPGATPIHDGMRTPMRDRAWNPMSPTRDNNWEDGNPASWGSSPQY
QPSSPRSRAYEAPTPGSGWTNTPSGNYSDAGTPRDNGSAYANAPSPYLPSTPGGQPPMTP
SSAYIPGTPGGQPMTPGSGGLDMMSPIGGGDTEGPWLLPDILVNVRKSNDDTVIGVVHEV
LADGSCSVGLGSSGNGDTIIAHPTEIDIVVPKKSDKIKIMGGPQRGATGKLIGVDGTDGI
VKVDDTLDVKILDMVLLAKLAHA
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaccgggactacgacgacgatgatgaaccagaggaggaagaagaggacgtg
tatgaagaggaggatgtagacgaggaggaggaagatgacgatagagggaagtctggacga
aaacggcgtagatcagattttatagatgatgcggcggaggaagatgatgatgaggacgaa
gacgacgatgatgaagattatggcggtggaggtggaggcggaggcggaggtgggagaaga
cgccctaaacggaggactggttcggaattctttgacctagaagctgctgttgatagtgat
gaggatgaggaggaagaagaaggagaagatgatttcatagtagatagtggagcagatata
cctgacgacgatggtgccagacgtgaatatcgtcaccgactgttgccgcatgaggaccaa
gaagaagaccttgaggagcttacgagaagcattaagcaaagatatgcgaggtcacctcat
gtagagtatgatgaggaagcaacagatgttgagcagcaagctctcttgccatctgtcagg
gatccaaagctctggatggtgaaatgtgcgattggacgtgagagagaggttgtggtttgc
ctaatgcaaaaggcaattgatagaggacctgaattgcaaattcgatcagttgtagccctt
gatcatcttaagaactatatatacatagaagcggacaaagaagcccacgtgagggaggca
tgcaagggtatgcgcaatatatatgcctccgctaaaataatgctggtccccataaaagag
atgactgatgtcctttcagttgaaagcaaagcggttgatcttgccagggatacttgggtc
agaatgaagatgggaacttacaagggagaccttgcaaaggttatggatgtagataatgtg
agacagaaagtcgtggtgaaattaattccaaggattgatttacaggctcttgcaaacaag
ttggaaggaagggaagctccaaagaaaaaggcatttattcctccgccacgctttatgaat
attgatgaagcaagagagatgaacctacgtgtggaacgtaggcgagacccgatgtcaggt
gactattttgagaatattggaggtatgatgttcaaagatggtttcttgtataagacagtg
tcaatgaaatcaatcagcaccctgaacatacagccaacttttgatgaacttgagaaattc
cgccaaactggtgagggtggggatggcgatatggctagtctatctactttgtttgcaaat
aggaaaaagggtcattttatgaagggtgaccgcgttattgtcgtgaagggggatctcagg
aatttgaaaggccatgttgagaaagtcgaagaagatactgttcatatcagaccaaatcag
aaagaccttcctttgcagactttggcttttagtgacaaggagctatgcaagtactttgat
cttggaaaccacgtgaaagtagtatctggttcatctgaaggggcaaccggtatggttgtc
tctgttcagggacatgtggttaacctggtatcagatacaactaaggagcttctccgtgta
tttgccgataatgttgttgagagttcagaagtaacatctggtctaactcgtattggggaa
tatgagctccatgatcttgtaatactagacaataagagcttcggtgtgattattcgtgta
gacagcgaagccttccaggttcttaagggtgtgcctgatagacctgaagtagcacttgtt
agacttagagagattaaagcgaaagttgaaaagaaagggaatgcccacgatcggtataag
aaccacttagcggtgaaagacgtggtaaaagttcttgagggtccttgtaaaggaaaacaa
ggtcctgtagaacacatcttcagaggagttgtttttatctatgatcgtcatcaccttgag
catgctggttttatttgtgccaaaacccaatcttgtgtgttggttggtggctcacgggca
aatggtgatagaaatggtaactcgttgtcatcaagatttgcgcatatgagagctccacca
cgtgcccctcaatctccaatgagatcatctagaggtggcccacctatgagttatggaggc
agacatagaggtggaagagggcacgatgctttagttggcgctgatgtgaaaattcgcctt
ggaccattcaaaggttgtaaagggcgtgttgttgatatcaaaggaacttcagtccgagtt
gaacttgaagcccagatgaaagttgttacagttgatcgcaaccatatctccgataatgtt
aacgtatcaacgccattcagggaaccatctagatatggtttgggaagtgaaacgccatca
catccttcaaggactccactgcacccatttatgacaccaatgagagatcctggagcaaca
cctatacatgatggcatgaggacgccaatgcgtgacagagcatggaatccaatgagtcca
actagggataataattgggaagatggaaaccctgcttcctgggggtcaagtccgcaatat
cagccatctagtcctcgttcaagggcgtatgaagcacctactcctggttctggttggact
aatactcctagcggtaattacagtgatgctgggaccccaagagacaatggttctgcatat
gctaatgctccaagtccttacttgccatcaactcctggtggacaaccaccaatgacgccg
agttcagcatatatacctggtactcctggcgggcagccaatgactcctggaagtggtggg
ctggatatgatgtcacctataggaggtggggatacggaaggtccttggctcttgcctgat
atcttggtcaatgtacggaagtccaatgatgatactgtcatcggagttgtccatgaggtg
ctagcggatggttcctgtagtgttggtctaggatcaagcgggaatggtgacactataatt
gcgcacccaactgaaattgatatcgttgtaccaaagaagtctgataaaatcaagatcatg
ggtggtccccaacgtggtgcaactggtaagcttattggtgttgatggcactgatgggatt
gtaaaggtggatgatacccttgatgttaaaatattagacatggtacttttggccaagtta
gcccatgcatag
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integrated database retrieval system
