Solanum dulcamara (climbing nightshade): 129891305
Help
Entry
129891305 CDS
T09577
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129891305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129891305
Spliceosome [BR:
sdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129891305
Complex C
U5 SnRNP specific factors
129891305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
129891305
NCBI-ProteinID:
XP_055822590
LinkDB
All DBs
Position
6:complement(68010445..68023484)
Genome browser
AA seq
2390 aa
AA seq
DB search
MWSGNGQDMWSNSNIAPPGTSGGPPPPPPQSMMPPPPPQSMMPPPPGTSSGQSMMPPGTS
GGGASGAGPPLPPPSYTVLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKEDMPPEH
VRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILYHITGA
ITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDV
DPLEPIQLELDEEEDSAVYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRLAGQLL
SDLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRS
PLRTEYRIAFPHLYNNRPRKVRLGIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVTKDRRE
KNVSDDDDDDDFALPEGVEPLLTETPIYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIPL
VSDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTE
LDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL
CREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCK
DLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSK
GVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPW
KVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKA
EQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERL
KESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLI
PVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVW
DTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTN
SYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYSDSRVETRHPIR
LYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHD
VNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRVLPKIRMTQEA
FSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNT
ALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGL
GMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRV
WAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQY
QVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
ASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGK
IPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSS
CADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWVDVQLRWGDYDSHDIERYTRAKFM
DYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRE
RIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPING
AIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTR
KGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLK
SISSYTAFSRLILILRALHVNNEKAKMLLKPDKSVVSEDHHIWPSLTDDQWMKVEVALRD
LILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTK
TTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYI
MPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSGLPE
HDFLTDLEPLGWMHTQPNELPQLSPQDVTSHARVLENNKHWDGEKCIILTCSFTPGSCSL
TAYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMG
VKHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtggaaacggacaagatatgtggagcaatagtaacatagcaccgccaggtact
agcggaggaccaccaccgccgccgccgcagtcaatgatgccgccccctccgccgcagtct
atgatgcctccaccacctggtacgagttcaggacagtctatgatgcctcctggtacaagt
ggtggaggagctagtggtgctggaccgcctctaccacctccctcttatactgttttgccg
actgaagctcagcttgaagagaaagctaggaaatggatgcagcttaactctaagcggtat
agtgataagcgaaagtttggatttgtggaaacgcaaaaggaggatatgcctccggagcat
gtccggaagattattagggaccatggggatatgtcatcaaaaaaatatcgtcatgataaa
cgtgtttatctcggagctcttaaatttgtcccgcatgctgtttacaaactccttgaaaac
atgcctatgccgtgggagcaggttcgagatgtcaaaatcctgtaccatattactggtgct
attacatttgttaatgagattccatgggttgtcgaacctatatatctggctcagtggggc
acaatgtggatcatgatgagaagggagaagagagaccggcggcatttcaagagaatgcgt
tttcctccttttgacgatgaggagccaccattagattatgctgataatcttttggatgtt
gatcctttggagccaatccagttggagttggatgaagaagaggattctgccgtttataac
tggttttatgaccacaagccattggtgaaaacaaagcttatcaatggtcctagttaccgc
aggtggcatttgtccctccctataatggcaacacttcaccgcctggctggacagcttctt
tcagacctgactgatcgcaattacttctacttgtttgatatggaatcctttttcactgcc
aaagcattgaacatgtgcatacctggtggtccaaagttcgaacctttatatcgtgacatg
gagaaaggagacgaagactggaatgagttcaatgatatcaacaaattgatcatcaggtca
ccacttaggacagagtacagaattgcctttccccacctctataacaacaggccaagaaag
gtgaggcttggcatatatcacactccgatgatcatgtacataaaaacagaggatcccgat
ctacctgctttctattatgatccgcttatacatcccatagtcaccaaggaccgtcgagag
aagaatgtttctgacgatgacgatgatgatgattttgccttacctgagggtgtggaaccg
ttgctgactgagactccaatctatactgatactactgctgctggtatttccctattgttt
gccccacgcccatttaacatgagatctggtcgaacaagacgtgctgaagatattcccctt
gtgtcagattggtttaaggagcattgtcctccatcatatcctgtcaaggtgcgcgtcagt
tatcagaagttgttgaaatgttttgtattgaacgagttgcatcatagaccccctaaggct
cagaagaaaaagcacctcttccgctcacttcaagccacaaaatttttccaaaccacagag
cttgattgggctgaggctggtcttcaagtttgcaagcagggatataatatgctgaatctc
ttgatccataggaagaacctgaattatcttcatcttgattacaattttaatttgaagcct
gtaaagacactaacaacaaaggaacgtaagaaatcccggtttggaaatgctttccacctg
tgtcgtgaaattctgcgtttgacaaagcttgttgttgatgctaatgtccagtttcgtctg
ggaaatgttgatgcatttcagctggcagatggcttgcaatacattttttcacatgttggt
cagttgacgggtatgtatcgttacaagtacaggcttatgaggcagattcggatgtgcaag
gatttgaaacatttgatctattatcgatttaataccgggcctgttggaaaaggtcctggt
tgtggtttctgggcacctatgtggagggtgtggttattctttcttcggggaatagtacct
cttttggaacgttggttaggaaatctactggcaaggcaatttgagggtcgccattcgaag
ggggtggccaaaactgtcacaaagcaacgtgttgaaagccactttgatttggagctccgt
gctgcagtaatgcatgatgtccttgatgctatgccagaggggatcaagcaaaataaagca
agaaccatcttgcagcatttaagtgaagcatggcgttgttggaaggcaaatattccttgg
aaggtccctggtttgcctgttcctattgagaacatgattctccgctatgtcaaatccaaa
gctgattggtggacaaatgttgctcactacaaccgtgaacgtataagaagaggagcaact
gttgacaagactgtgtgtcgaaaaaaccttggaagattgactcgcctttggctgaaggct
gaacaggagcggcaacataactacttgaaagacggtccatatgttactccagaagaagct
gtagccatatatactaccactgtgcattggttggagtccaggaagttttctcccatacca
ttccctccattgtcatacaagcatgacacaaagctacttatccttgcactggagagattg
aaagaatcttacagtgtggctgtgaggttaaaccagcagcaaagggaagagttgggcctc
attgagcaagcttatgataatccacatgaggcattatcacgaattaagcgtcatctgctt
actcagcgtgcctttaaagaagttggcattgagtttatggacttgtacagttacttgatt
cctgtttatgagattgagccacttgagaagattactgatgcatatctggaccagtaccta
tggtatgaaggtgataagcgccatctctttccaaattggattaagcctgcagactcagag
ccaccacctctgttagtgtataaatggtgtcaaggcataaacaatttgcaaggagtatgg
gacaccagtgaaggacagtgtgtggtgatgctgcagacgaagtttgagaagttctttgaa
aagatcgacttgaccatgctgaacaggcttctgcgtttggtgctggaccacaatattgct
gattatgtcactgcaaaaaacaatgtcgtactgtcttacaaagatatgagccatacaaat
tcatatgggctgatacgcggtcttcagtttgcttcatttgttgtacagtactatgggctt
gtgttggatcttttgcttcttggtttaactcgagctagtgaaattgcgggtccaccacag
atgcctaatgagttcataacctatagtgattctagagtggaaacaaggcatccaatccgg
ttgtactctcgatacattgacaaggtgcatatattatttcgcttcactcatgaagaggct
cgggatcttatccaaagatatcttactgagcatcctgatcccaacaatgaaaatatggtt
ggttataacaacaagaaatgctggccaagggacgcaagaatgaggctcatgaagcatgat
gttaatcttgggagaagtgtcttctgggacatgaagaatcgactgcctagaagtatcact
actttggaatgggaaaacagctttgtctctgtttatagcaaagataatccgaacttgctc
ttcagcatgtgtgggtttgaagttcgggtactgcctaagataagaatgacccaagaggca
ttcagcaataccagagatggagtctggaatttacaaaatgagcagactaaggaacgcacg
gctgttgccttcttgcgtgtagatgatgagcacatgaaggtgttcgagaatcgtgttagg
cagatccttatgtcctctggttcgacaacattcacaaagatagttaacaaatggaacact
gctcttattggccttatgacatatttccgtgaagcaactgtgcatacacaagagttgctg
gacctgctggtcaaatgtgaaaacaagatacagactcgtattaagattggtttgaactca
aaaatgcccagcaggtttcctcctgttattttctacacaccaaaggaaattggagggctt
ggaatgttgtcaatgggtcacatattgatcccacagagtgatcttaggtatagtcagcaa
acagatgttggtgtcacacatttcagaagtggaatgagccatgaagaggaccaattgatc
ccaaatctctaccgatacatacagccttgggaaagtgaattcatagactctcagagagtt
tgggccgagtatgctttgaagaggcaggaagctcaggcacagaataggcgtttaactctt
gaagatttggaagattcatgggatcgtggaatacctcgaatcaatacattgttccagaag
gatcgccacactcttgcatatgacaaaggatggagagtaagaacagactttaaacagtac
caggttcttaagcagaatccattctggtggacacaccagaggcatgatggaaagctatgg
aacctgaataactatcgtactgatgttattcaagctcttggaggagttgaaggaattctt
gagcatacattattcaaaggaacatatttcccgacttgggagggacttttctgggagaaa
gcttcaggttttgaggaatccatgaagtacaagaaactgactaatgctcaacgatctggg
cttaatcaaattcctaatcgtaggtttactctttggtggtcgccgactataaatagagca
aatgtctatgttggtttccaagtacagctggacctgactggaatatttatgcacgggaag
attccaactctgaagatatctctgatacagatattccgtgcacatttgtggcagaagatc
catgagagtgttgtcatggatctctgccaagttttggatcaagagttggatgcattggaa
attgaaactgtacaaaaggaaacaattcatccaagaaagagttacaaaatgaatagttca
tgcgctgacatcctcctctttgctgcgcatagatggccaatgtcaaagcctagtcttgtg
gccgaatcaaaggatgtgtttgaccagaaagccagtaacaaatactgggtagatgtgcag
cttcgatggggtgactacgattctcatgatattgagcgttatacacgggcaaagttcatg
gattacacaacagacaacatgtctatttatccctcgcctactggtgtaatgattggactt
gaccttgcttacaacttgcattccgcctttggaaactggtttcctggttcaaaaccattg
cttgcccaagccatgaacaagattatgaagtcaaatcctgcgctctatgtgctgagggaa
cgcataaggaaagggttgcaactgtattcttcagagcccacagaaccatatttatcatct
cagaactatggagagatattcagcaatcaaatcatctggtttgttgatgacacaaatgtg
taccgtgtgaccatccacaagacctttgagggaaatctgacaacaaagcccataaatggt
gcaattttcattttcaatcccaggacaggtcaactgtttttgaaggtcattcacacaagt
gtgtgggcagggcaaaagcgtcttggccaactggcgaagtggaaaacagccgaagaagtg
gctgcgcttgttaggtctttgcctgttgaagaacaaccaaagcaaattattgtgactcgg
aagggaatgcttgatccattggaggtccacttgctcgattttccaaatattgttatcaaa
ggaagtgagctgcaattaccattccaggcttgtttaaagatagagaaatttggtgatctg
atactaaaggctacggaaccacaaatggttctgttcaacatatatgatgattggttgaag
agcatctcatcttatacagcattctccaggctcatcctcatcctgcgtgcactccatgtg
aacaacgaaaaggctaagatgttacttaagcctgacaagtcggtcgtttctgaggatcac
cacatctggccttcacttacagatgaccagtggatgaaggttgaggtagcacttagagat
ctcattctctcagactatgcaaaaaagaacaatgtaaacacatcagcattgacgcagtct
gagatccgtgatattatacttggagctgagataactcctccatcacagcagcgccaacag
atagctgagattgagaaacaggccaaggaagcaagtcaactgaccgctgttaccacaaag
accactaatgtccatggtgatgagttgattgttactacaacaagtccctatgaacaagct
gcctttggttctaaaacagattggcgtgttagagcaatttctgctacaaatctttatctc
cgtgtgaaccacatatatgtaaattcagaggacataaaggagactggatatacttacatc
atgccgaaaaatattctgaagaagttcatctgcattgctgatctgcggacacaaattgct
ggttacttgtatggtgtaagtccaccagataatcctcaggtgaaagaaatccggtgtatt
gcaatgcctccacagtgggggacacatcagcaggtgcatctaccttctggtcttcctgag
catgattttctcaccgacttggagccgttgggatggatgcacacacaaccaaatgagctt
cctcagttatcgccacaggatgtgacttcacatgctcgggtcttggagaacaacaaacac
tgggatggagagaagtgcattatattgacatgcagtttcactccaggttcttgttcatta
actgcatataagttgacgccaactgggtatgaatggggacgtgctaacaaggatacagga
agcaaccctcatggttacctgccaactcattacgagaaggtccagatgctcttgagtgac
cgattcctaggcttttacatgatacctgataatggaccgtggaattacaacttcatggga
gtgaagcacactgttagcatgaagtatggagttaagttaggtacacctcgtgagtactac
aatgaggatcacagacctacacatttcctggaattcagtaatatggaggaaggcgatact
gctgaggcagatcgggaggatacatttacataa
DBGET
integrated database retrieval system
