Solanum dulcamara (climbing nightshade): 129891641
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Entry
129891641 CDS
T09577
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129891641
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sdul01001
]
129891641
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129891641
03036 Chromosome and associated proteins [BR:
sdul03036
]
129891641
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
129891641
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
129891641
Protein kinases [BR:
sdul01001
]
Serine/threonine kinases: Other
TAF1 family
129891641
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129891641
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
129891641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
ubiquitin
Rad60-SLD
zf-CCHC_6
Ubiquitin_5
HTH_3
Motif
Other DBs
NCBI-GeneID:
129891641
NCBI-ProteinID:
XP_055823034
LinkDB
All DBs
Position
6:77713450..77740356
Genome browser
AA seq
1859 aa
AA seq
DB search
MGYEPGGSSRDDRDEDDEEEYEEAGGGNRLLGFMFGNVDYSGDLDVDYLDEDAKEHLAAL
ADKLGSSLTEIDLSVKSPQESADAAEQDYDEKAEDAVDYEDIDEQYEGPEVQTVTEEDLL
LPKRDYFSTEISLTTLENRASVFDDENYDEDDNEDKEPEVVENTAEVQSTPGKGEYNNEA
EVTFHENKVPEEVISTDAPESSEDLQEEEPLALEEPVDSQNSLPLPVLCVEDGVAILKFS
EIFALHKPRKKAEKRERRCSVPKDKYKAMDTLDIVEEDEVTLLRGSYKEFPWLRMTHVHH
DSALTLLDNEPGTVQGTDDLKPKIEKKDSCCSAEPMKEKLSMDLSADWSSPICPEFYPLD
QQDWEDRIIWDNSPPLSDNTAESCEISEPDYEALTDKQLDVEAESQSFQSEKEIELHEKG
HSSFFSCSVSVEPFGSKQPSGHLDISLSEGRYHPQLLRLESRLNADRQKSTDTPKDGDTD
EILSRDALRRFSKLTLQNRDILEESWVDNIIWEPDQPFPKPKLIYDLQDEQMLFEVLDNR
DGQQLLHHAGAMITTGLVKPSNGDSAELYGLSGLSGRFNIANDKFYLNRKSTQQLKSHSK
KRTAHGLKVLHSIPALKLQTMKAKLSNKDIANFHRPRALWYPHDNEVVLKEQGKLPTQGP
MKIILKSLGGKGSKLHVAAEETISSLKSKASKKLDFKLSEPVKIIYCGKELEDDKSLSAQ
NVPPNSVLHLVRTRIHLLPRAQKLPGENKSLRPPGAFKKKSDLSAKDGHVFLMEYCEERP
LLLGNVGMGARLCTYYQKSSPNDQQGTLMRNGNTGLGSVLTLDPSDKSPFLGDIKPGCSQ
SSLETNMYRAPIFQQKVSSTDYLLVRSTKGKLSIRRIDRTDVVGQQEPHMEVISPGSKGV
QTYIMNRLLVYMYREFRAIEKRGSRPFIRADELSAQFPSLSEAFLRKRLKHCADLQRRSN
GQFQWVMRFNFRIPSEEELRRLVSPESVCAYESMQAGLYRLKRLGITRLTHPTGLSAAMN
QLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFS
YVRTTPKAPIPNAISKKKAVVAKGSTVTGTDADLRRLSMEAAREVLLKFNVPEEQIAKLT
RWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQNL
SAVDGEENESDSEVNSDLDSFAGDLENLLDAEDFEDGEEGSHEPKHDNVDGVKGLKMRRR
PFQAQVEEEIEDEAAEAAELCRMLMDDDEADRKKKKKDKAMGEQVGFMSDIRYRFSTEST
DRGKKPQIFAKPSIKSDGLNVLDFIGDQKELQAEGFAAKRAPSSKVKPKKKFDVVDSGLF
NKKVKILGEGIKPIKEKKSARDSFVCGACGQLGHMRTNKNCPKYGEDVEARPESIDLEKT
TGKSMSSTDLLDQPQIFSKKVIQKSGTKNVMVEAHEDDNSSSKAKVLKVKCGSTDKLPDK
PTPATSLNSDIPVTSDAEIGTVPPPIKFNKIKFSNKMRAEDDSNEAHKPSILVRPPMETA
DSHRSKKIVIKQLKDSVSVDEGFLDGSNGMEFRKTKKINELSYLGMQEREHFYEEAFGRK
RMDDKRLWEEEERRRIAVRQREERGKIYERQKALEEQEKLAAIESYQDAIRREREEEERL
KEKKKKKKKTEIRDDYLDDFLPRRNDRRIPDRDRSVKRRQTFESGRHAKEHAPPTKRRRG
GEVGLSNILEEIVDTLKNNVNVSYLFLKPVTRKEAPDYHKYVKRPMDLSTIKERARKLEY
KNRGQFRHDVAQITINAHLYNDGRNPGIPPLADQLLEICDYLLEENESILAEAESGIEQ
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgggttatgaacctggtggctcatcccgggatgaccgtgatgaagatgatgaggaagaa
tatgaggaagctggcggtggtaaccgacttttgggatttatgtttggaaatgttgattac
tctggtgatctcgatgttgactaccttgacgaggacgccaaggagcatcttgctgcttta
gctgacaagcttggttcgtctctgacagagatagatttgtcggtgaagtccccacaagaa
tctgcagatgctgctgaacaagattatgatgagaaggctgaagatgctgtagattatgag
gacattgatgagcaatatgaagggcctgaggtacaaactgttaccgaagaggacctatta
ttgccgaagagggattatttttcaacagaaatctctttaactactttggagaatcgtgct
tctgttttcgatgatgaaaactatgatgaggatgataatgaagacaaggaaccggaggtg
gtagagaacactgctgaagttcaatctactcctggaaaaggagagtacaacaatgaagct
gaagtcacttttcatgaaaataaggttccagaagaagttatatccacggatgctcccgaa
tctagtgaagatcttcaggaggaagaacctcttgctttggaagagccagttgatagtcaa
aactctctgcctttacctgttctttgtgtagaagatggggtggcaattctgaagttctct
gaaatttttgcccttcataaacctcggaaaaaagcagagaagagggagcgacgttgctct
gtgcccaaagacaaatacaaggccatggacacactggatattgttgaagaagatgaagtt
acattactgagagggtcctataaagagtttccttggttgaggatgacccatgtacatcat
gatagtgctttaacgttgctggataatgaaccaggaacagttcaagggactgatgactta
aagccaaaaatcgagaaaaaggattcttgttgtagtgctgaaccaatgaaagaaaaacta
tcaatggatctttctgctgattggagctcacccatttgtcctgagttctatcctcttgac
cagcaagactgggaggatagaattatttgggataattctcctccattgagtgataatact
gctgagagttgtgagatttctgaacctgattatgaagcattgactgataaacagctggat
gtggaggccgagtctcaaagttttcagtcagaaaaagaaattgaactccatgaaaaaggt
catagctcctttttttcttgcagtgtttctgtggagccttttggttcaaaacaaccttca
ggacacctggatatttcattatcagaaggaagatatcaccctcagcttttgagattagag
tctcgcttgaatgcagataggcaaaagagcacagatactccaaaggatggagacactgat
gaaatccttagcagagatgccttaaggcgatttagcaagcttacattacaaaatagagat
atactggaggaatcttgggtggacaacattatttgggaaccagatcaaccctttccgaag
ccaaagctcatatatgatcttcaagacgaacaaatgctttttgaagttttggataacagg
gacggccaacagcttctgcatcatgctggagcaatgatcacaacaggtctagtgaagccc
agtaatggtgattctgccgagttatatggtctcagtggtttatccgggcgtttcaatatt
gccaatgacaaattctatttgaacagaaagtcaactcaacaactaaaatcacattcaaag
aaacgcactgcacatggtctcaaagtgctgcattcgataccagctcttaagctgcagaca
atgaaggctaagctaagcaataaagacatagcaaattttcatcggccaagagctttatgg
tatccccatgacaatgaggtggtacttaaggaacagggaaagttgcctacacaagggcca
atgaaaatcatattgaagagcttgggtggcaaaggaagtaaacttcatgtagcagcagag
gagaccatttcttcccttaagtcaaaggcctccaagaaacttgatttcaaactgtcagag
ccagtgaagataatttactgtgggaaggagcttgaagatgataaatctctttctgcccaa
aatgtgccaccaaactctgtgctgcatcttgttcgtaccaggatacatttgttgcctagg
gcacaaaagcttcctggtgagaacaagtccctgcgtcctcctggtgcatttaaaaaaaaa
tctgatctttccgcaaaagatggccatgttttcttaatggaatactgtgaggagagacct
ttgctccttggaaatgttggaatgggtgcaagattgtgtacttactaccaaaaatcatct
ccaaatgatcagcaaggcaccttgatgcgcaacggaaatactgggttggggagtgtgctc
acacttgatccttcagataaatcccccttccttggggatataaaacctggttgcagccag
tcatctcttgaaacaaatatgtatagggcaccgatttttcagcagaaggtctcatcaacg
gattatttgttggttcgctcaacaaagggtaagctgtccataaggcggatagacaggact
gatgttgtagggcaacaggagcctcacatggaggtaatctctcctggatcaaaaggtgtt
cagacctacataatgaacagactattggtatatatgtatcgtgaatttcgtgctattgaa
aaacgaggttcacgtcctttcatccgcgcggatgagctgtctgcacagtttcctagcttg
tcagaggcctttcttagaaaaaggctcaaacattgtgctgatttgcagagaagatcaaat
ggacagttccaatgggttatgaggtttaattttcggataccatccgaggaggaattgagg
aggctggtttcgccggaaagtgtttgtgcatatgaaagcatgcaagctggcctgtatagg
cttaagcgcctaggtattacgcggcttactcatcctacaggtctatcagctgcaatgaac
cagctcccagatgaagcaattgctttagctgctgcatcacatattgaaagggaacttcaa
atcacaccttggaacttgagtagcaactttgttgcttgtacaaaccaggacagagaaaat
attgagcgtctggaaattactggtgttggtgatccatctggtcggggattagggttcagt
tatgtacgcaccactcctaaggcaccaataccaaatgcaatctccaagaaaaaagcagtt
gttgccaaagggtcaacggtaacaggcactgatgcagacctacgaagactgagcatggaa
gctgcacgcgaggttcttctcaagtttaatgttccagaggagcagattgctaaacttaca
aggtggcaccgaattgctatgattcgcaagctttctagcgagcaagctgcatctggtgtc
aaagttgatccaacaacaataagcaaatatgctcgtggccagcgcatgtcctttttgcag
ctgcagcagcaaaccagagaaaaatgtcaggaaatctgggacagacaagtccaaaatctt
agtgcagttgatggtgaagaaaatgagagtgactctgaagttaacagtgacctggactca
tttgctggtgacttggaaaatcttcttgacgcagaggacttcgaggatggggaggagggt
agtcatgagcccaaacatgataatgtagatggagtcaaaggactcaagatgagaagacgc
ccctttcaggctcaggtggaagaggagatcgaggatgaggcagctgaagctgcagaatta
tgccgcatgctcatggatgatgatgaagctgatcggaagaagaaaaaaaaggacaaagcc
atgggcgaacaagttggtttcatgtcagatataagatacaggtttagtactgaaagcact
gatcggggtaaaaaacctcagatatttgccaagccaagcatcaagtctgacgggctaaat
gtgttggatttcattggagatcagaaggagctgcaggctgaagggtttgctgctaaaaga
gccccatctagcaaggtgaaacccaagaaaaaatttgatgttgtggactctggattgttt
aataaaaaagttaaaatactaggggagggaataaagcccataaaagagaagaagtcagca
agagacagttttgtctgtggagcctgtggtcagcttggtcacatgagaactaataagaat
tgtcccaagtatggggaagatgtggaggcacgaccagaaagcatcgatctggaaaagact
acaggaaaatctatgagttctactgatctcttggatcagccccagatcttctccaagaaa
gtcatccaaaaaagtggaacaaagaatgtgatggtcgaagctcacgaggatgataattcc
agttcaaaggccaaagttctgaaggtcaaatgtggttcaaccgacaagcttcctgataaa
cctactcctgctacctcacttaattctgacataccagtgacatcggatgctgaaattggg
actgtaccaccccccataaaatttaataaaatcaagttttcaaataagatgagagctgag
gatgattccaatgaagctcacaagccttccattctggtaaggccaccaatggagactgca
gactcacatcgcagcaagaaaattgtaattaagcaacttaaggactccgtaagtgtggat
gaaggattcctggatggaagcaatggcatggagttcaggaagacaaagaaaatcaacgaa
ttgtcgtacttggggatgcaagagagggaacacttctatgaagaggcttttggaaggaaa
agaatggatgataaacgattatgggaagaagaggagaggaggagaattgctgtgaggcag
agagaagaaagaggcaagatatatgagcgacagaaggcattagaagagcaggagaaatta
gcggcaattgaaagctatcaagacgccataagaagagagagggaggaagaagaacgtcta
aaggaaaagaagaagaaaaagaagaagactgaaataagagatgattacttggatgatttt
cttcccagaagaaacgacagaaggataccagatcgagacagatcggtgaagcggaggcaa
actttcgagtcggggaggcatgctaaagagcatgcaccgcctacaaagcgccgaagaggg
ggagaggttggtttgtcaaatattttggaagaaattgttgacacactgaagaacaatgtg
aatgtatcatacctcttcttgaagccagtgacccgaaaggaagctcccgattatcacaag
tatgtaaagcgccctatggacctctctacaatcaaagagagagccaggaaactggaatat
aaaaaccgcgggcaattcaggcatgatgtggcacagatcaccatcaatgcacatctgtac
aatgatgggcgcaacccaggtattcctcctcttgcggatcagcttctagagatttgtgac
tacttgctggaagagaatgagtccatcttagctgaagctgaatctggtattgagcaatga
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integrated database retrieval system
