Solanum dulcamara (climbing nightshade): 129891848
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Entry
129891848 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 32
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdul03009
]
129891848
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129891848
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
90S particles
Helicases
129891848
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
FTA4
Helicase_C_2
SKIP_SNW
MAP10_N
Motif
Other DBs
NCBI-GeneID:
129891848
NCBI-ProteinID:
XP_055823303
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All DBs
Position
6:1296672..1304627
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AA seq
756 aa
AA seq
DB search
MRKHAPKSRKVKLQNRLSEVHEIELLEEWLESGKPESGSNPLSLDPLPHKAPVGRLPDGS
FSRFAGCDRFSQLPVSKKTKDGLTQCKYKTMTDIQRASLPHSLLGRDILGAAKTGSGKTL
AFVIPVLEKLYKARWGPEDGVGCIIMSPTRELAGQLFEVLKSVGKHHGFSAGLLIGGRKD
VDAEKEHVNVLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKRELNAII
SQLPKHRQTLLFSATQTKSVQDLARLSLKDPEYLGVHEESDTATPNRLQQTAMVVPLDKK
FDMLWSFIKAHLNSRILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSQ
FCEQRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDCAAYIHRVGRTARYFSGGRSVLFVM
PSEIKMLEKLEEKRIPLRVIKANEKRIQSVSDLLASLLVKYPDLQHLAQRAFVTYLKSIH
KQRDKETFDVTKLPIDEFSASLGLPMTPKIRFLKQKLKGKTVSEALSLIPENTSNDNLLE
FPIKEPEFPNKDPDTGKSDVEEVDEDILLAKETQGVGENINSKGDDMLATRVTKKKKLKI
NVHRPVGTRVVFDEEGNTLPPLARLAASSSGADSVQLNKEKVNQRYAELRKNLKVADKED
KDLDRKRRKEKRIKEKMKNKRGREEDEEEEDEELSGSDMEIPRGRVDKKTKVYFDSDNED
GERTGHMSKKEGIAADAISLAEQEELALKLLNSMHS
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagcacgcgcctaaatcacggaaagttaaattacagaatcgattatcagaggtt
catgaaattgagcttctggaggaatggttagaatcgggtaaaccggaatccggttcaaat
ccgttgtcgctcgacccattaccacacaaagctccggttggacgccttcctgatggttca
ttctctaggtttgctggttgtgataggttcagtcaattgccggtttctaagaaaactaaa
gatgggttaactcagtgtaaatacaaaactatgaccgatattcaaagggcttctctgcca
cactctcttttagggcgtgatattcttggtgcggcgaaaactggttcaggaaagacattg
gcttttgttattccggtgctagagaaattgtataaagctcgatggggaccagaggatggt
gttggatgcatcataatgtctcccacaagggagttagcgggtcaacttttcgaagtactt
aaatctgttgggaagcatcatggctttagtgctggccttctgattggtggccgcaaagat
gttgacgctgaaaaagagcatgttaatgtacttaacatcctggtctgtactcctggccga
cttcttcagcatatggatgagacaccaaattttgattgttcacaacttcaggttttagtt
ctggatgaagcagatcgtattcttgatgtggggtttaagagggaattaaatgcaatcatt
tcacaattgcctaaacataggcagaccttgttgttttcagcaacccagacgaagtctgtt
caagatctggcaaggctcagtctgaaagaccctgaatatttgggtgtacatgaggagtct
gatactgcgactcccaaccgcttgcaacaaacagcaatggttgttcctcttgataagaaa
tttgacatgttgtggagttttataaaggcacatcttaactcaaggatattggttttccta
tcaagctgcaagcaggtaaaatttgtttttgaaactttcaaaaaactccgtcctgggatt
cccctcaagtgtcttcatggaaggatgaagcaagataaaaggatgggaatttattcccaa
ttttgtgaacaacgttctgttctgttctccactgatgttgcttcgaggggacttgatttt
aataaggcagttgattgggttgtccaggtggactgtcctgaagattgtgctgcttacata
cacagagttggccgcactgctcgttacttttcaggtggaagatctgttttatttgtgatg
ccatctgaaataaagatgcttgaaaagttggaagagaaaaggattccccttcgagttatc
aaggcaaatgaaaagaggatacagtctgtctcggatcttcttgcttctttattggtcaag
taccctgatctacaacatctggctcaaagggctttcgtgacatatttgaagtccatacac
aaacagagagataaagagacttttgatgttacaaaacttcctattgatgaattctctgct
tcattgggtcttcctatgacccccaaaatccgatttctgaaacagaaactcaaagggaag
acagtgtctgaagcattatctctcataccggagaacacaagtaatgataatttgttggaa
tttccaattaaggagccagaatttccaaataaggatccagatacaggtaaatcagatgta
gaggaagtggatgaagatatccttctagctaaggagacgcaaggagttggagaaaatatt
aacagcaaaggagatgacatgctggccactagagttacgaagaaaaagaaactaaagatc
aatgtccatagaccagtagggacaagggttgtgtttgatgaggaagggaacaccttacct
cctcttgcaagattagcagcctcaagcagtggtgcagactctgttcagctcaacaaagaa
aaagtaaatcagagatatgctgagttaagaaagaacttgaaggtggccgacaaggaagac
aaggatttggaccgcaaacgtcgcaaagaaaaacgaatcaaggagaagatgaagaacaag
agagggagagaggaggatgaggaggaggaagatgaagaactctctgggtcagacatggaa
atccccagaggtagagtcgacaagaaaacaaaggtttattttgacagtgacaacgaggat
ggtgagaggacagggcacatgtctaaaaaggagggtattgctgctgatgctatatctttg
gcagaacaagaagaactggctctgaagttgctaaattccatgcactcataa
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