Solanum dulcamara (climbing nightshade): 129891880
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Entry
129891880 CDS
T09577
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129891880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129891880
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129891880
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129891880
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129891880
U7-dependent histone pre-mRNA processing factors
129891880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
HAMP_2
Motif
Other DBs
NCBI-GeneID:
129891880
NCBI-ProteinID:
XP_055823328
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All DBs
Position
6:complement(10168045..10176295)
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AA seq
695 aa
AA seq
DB search
MASTGQPQSSLKRPNPAVNREGDKLVITPLGAGNEVGRSCVFMTFKGKTIMFDCGIHPGY
SGMSALPYFDEIDPSSIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL
SDYVKVSKVSVEDMLFDEHDILHTMEKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDVCIIESTYGVQLHMPRQIREKLFTDVIH
STLMQGGRVLIPAYALGRAQELLLILEEYWSNHPELANFPIYYASPLARRCMAVYQTYIN
AMNERIRNQFVSSNPFNFKHISSLNSIEDFIDNKPCVVMASPGSLQSGLSRQLFDKWCSD
KKNACVIPGYVVEGTLAKTIINEPKEVTLTNGLSAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGASNEMDRLKLKLTSLFADGNTKILTPKNCQSVEMHFNSEKMAKTIGKL
AEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRITIPYSGAFAVIHHRL
KQIYESVESSTDEESGVPTLQVHERVMVKQESENHLSVHWTADPISDMVSDSVVALVLNA
SREMPKVSIESETSINEQEDAKKAEKIIHALLVSMFGDLEFGDDDKLLINCDGNVAHLDK
QTGDVECENESLKERVRTAYRRIRSAVKPIPLSVS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcatctactggacaaccacagtcatctttgaagagacctaatcctgcagttaataga
gaaggagataaactggttatcactcctttaggggctggaaatgaagtgggacggtcctgt
gttttcatgacttttaaagggaaaacaatcatgtttgattgtggcattcatccaggttac
tcaggcatgtctgctttaccctattttgatgaaattgatccttcatctattgatgttctt
cttgttacccattttcacttggatcatgctgcatcccttccttatttcctcgaaaagact
acatttaaagggcgtgttttcatgacacatgccacaaaggccatatacaagttgcttttg
tcagattatgttaaagttagcaaagtctcggttgaagatatgttgtttgatgaacatgac
attcttcacaccatggaaaaaattgaggttattgacttccatcagactatggaagtaaat
ggtattcgtttttggtgttatactgccggccatgtccttggtgctgccatgtttatggtt
gatattgctggtgttcgagttctctatacaggagactattcccgtgaagaagacaggcat
ctccgcgcagctgagatcccacaattttctccagatgtttgcattatagaatcaacttat
ggtgttcaactccatatgccacgtcagataagagagaagcttttcactgatgtcatacat
tcaacactcatgcaagggggtcgggtgctgattcctgcttatgccttgggacgtgcacag
gaacttctccttatcctggaggaatattggtctaaccatcctgaactagctaacttcccc
atatattatgcttccccacttgcaagaaggtgcatggctgtctatcagacttacatcaat
gccatgaatgaaaggatccgcaatcaatttgtcagctcaaatccttttaatttcaaacat
atatcttccctgaacagtattgaagattttatagacaacaagccatgtgtggtgatggca
agcccaggtagtcttcaaagtggtttgtcgaggcaactgttcgataaatggtgctctgac
aagaaaaatgcatgtgtcatacctgggtatgtagtggaagggaccttggcaaagactatc
atcaacgaaccgaaggaagtcaccctcacaaatggcttgtctgctccacttaatatgcaa
gttcattatatttcattctcagctcatgcagattatgctcagacaagtaccttcttgaaa
gaacttatgcctcccaacataattctagtccatggagcgtctaatgagatggatagactc
aagctgaaacttacctccctctttgctgatgggaatactaaaattctcactcccaagaac
tgccagtcagttgaaatgcacttcaactctgagaaaatggcgaaaactattggaaagctg
gctgaaaagacccctgaagtgggcgaaactgtcagtggtttacttgtgaagaaaggtttc
acttaccagatcatggcacctgatgatctccatgtcttttctcagctatccactgcaaat
atcacacagagaataactatcccctattcaggtgcttttgctgttatacatcacaggctt
aagcagatctatgaaagtgtagagtcctcaacagatgaggaatctggtgtaccaactttg
caggtgcatgaacgagtgatggtgaagcaggagtcagagaatcatctctctgttcattgg
acagcagatccaattagtgatatggtatctgactccgtcgtggcattggttctgaatgcc
agcagggagatgcctaaagtatcaattgagtcggaaacttccattaatgagcaggaagat
gcaaagaaagctgagaaaataatccatgcactcctggtttctatgtttggtgatctggaa
tttggggacgatgataagcttttaatcaattgtgatgggaatgtcgctcatctggacaaa
caaactggtgacgtcgagtgtgaaaatgaaagtctcaaggagagagttaggactgcatac
cggcgaattagaagtgctgttaagccaataccgctttctgtatcttag
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