Solanum dulcamara (climbing nightshade): 129892164
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Entry
129892164 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129892164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129892164
03012 Translation factors [BR:
sdul03012
]
129892164
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129892164
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129892164
Translation factors [BR:
sdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129892164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_C
ATPase
Ank_2
Ank_5
HA2_N
AAA_19
nSTAND3
AAA_22
AAA_23
ABC_tran
Rad17
AAA_7
PhoH
AAA_16
Sigma54_activat
AAA_11
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
129892164
NCBI-ProteinID:
XP_055823696
LinkDB
All DBs
Position
6:13751502..13771565
Genome browser
AA seq
1206 aa
AA seq
DB search
MASTAPSSSSGFGKKRQKKGQKQHEVTNVAESTRIRVAQVLEQFRASNDEVYTFESNLSN
RDRAAVHMLCRKMGMKSKSSGRGDQRHISVFKIKQNMGTLKGKDVLSCFKFSEEAKYALH
DLFTRYPPDDGETSEQVVGKHSKKFDKLQGKKDDMFCKPVMSMSEIAKRVESFASRIEKT
PNLRQITLQRSKLPIASFKDAITSTIESNQVVLISGETGCGKTTQVPQFILDHMWGKGET
CKIVCTQPRRISATSVSERISAERGESVGDTVGYKIRLESRGGRQSSIMFCTNGILLRVL
VTNRSASFNKEATGKMGKDTISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLRLVL
MSATLDAERFSKYFGGCPVIRVPGFTYPVKTFYLEDVLSIVKSTENNHLDSTSTSVMSEE
SILTEEYKVALDEAINLAFSDDDLDPLLDLISSDGGPKVFNYQHSLSGVTPLMVFAGKGC
IGDICMLLSFGADCHLRANDGKTALDWAEQENQTEAAEIIKKHVEKSSSSCEEQQHLLDK
YLSTVDPELIDDVLIEQLLRKICIDSEDGAILVFLPGWEDINRTRERLKASHFFNDQSKF
SVIPLHSMVPSVEQKKVFRRPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDP
YNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPIEEL
CLQVKLLNPDCKIEEFLQKTLDPPVYETIRNAIIVLQDIGALSFDEKLTELGERLGSLPV
HPLTSKMLLIAILLNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKAELASWYGGRS
DQLAVVAAFEGWKSAKEIGQESRFCSMYFVSSSTMHMLSGMRKQLQSELLRNGFIPGDGS
SCNLNTQDPGILHAILLAGLYPMVGRLLPPLKGGKRAVIETAGGDKVRLSPHSTNFKLSF
QKFYDQPLIVYDEITRGDGGLHIKNCSVIGPLPLLLLATEIVVAPGNEDDDDGNDDDESD
YEDGDEDNGEEDNIKADLSEAHQGEKIMSSPDNIVKVVVDRWIPFESTALDVAQIYCLRE
RLTAAILFKVTHPGKVLPEVLAASINAMACILSYNGMSGISLPLEPVDSLTTMVSATEIG
QSDPGWNNRLDMNPNISPNSFGYNARHQHRNMHHQRGSIHISKGSFAHGGTMQRGHSKRK
RGNGPY
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacagctccatcatcatcatctgggtttgggaagaagaggcagaagaaaggc
caaaaacaacatgaggttaccaatgttgcagaatctactcggattcgggttgcccaagtt
cttgaacagttccgtgcttctaatgatgaagtgtacacatttgaatcaaacctttcaaat
cgcgatagagctgcagttcacatgttatgccggaaaatgggaatgaaatcaaaaagttct
gggcgtggggatcaacgtcatatatctgttttcaagattaaacagaatatgggcacactg
aaaggaaaggatgtgctaagttgttttaaattttcggaggaggcaaaatatgctctacat
gatttatttacgcgatatccacctgatgatggggagacaagtgaacaagtagttgggaaa
cacagtaagaaatttgataaattacaaggaaagaaggatgatatgttctgtaaacctgtg
atgagcatgtctgaaattgcaaaaagggtggagtcatttgcgtcaagaatagagaaaacc
ccaaacctgagacagatcacattacaaaggtctaagcttccaattgcttccttcaaggat
gcgattacatcaactatagaatctaatcaggtggtcttgatctctggtgaaactggatgc
ggtaaaactacacaggtcccccaatttattttagatcatatgtggggtaaaggcgaaaca
tgtaaaattgtatgtactcagccacgacgaatttctgccacatcagtttctgagagaatt
tctgctgaaagaggcgaaagtgttggggatacggttggttacaagatacggctggaaagc
agaggtgggaggcagtcatcaatcatgttttgtaccaatgggattctactgagggtcctg
gttaccaacagaagtgccagcttcaacaaggaggctaccgggaaaatgggcaaggatacc
atttctgatataacccacatcattgtggacgaaattcatgagagggatcgctactccgat
ttcatgctcgctattctcagggacttgcttccttcttatccaaatttacgtttggttctg
atgagtgctacactggatgctgaacgtttttcaaaatacttcggtggctgcccagttatc
cgagtccctggatttacttatcctgtaaaaacattctatcttgaggatgtactttctatt
gttaagtcaactgaaaataatcaccttgactccacctcaaccagtgtcatgtctgaggaa
tcaatattaacagaggagtacaaagttgccttagatgaagcaattaatctggctttttca
gatgatgatctggatccccttttagatctaatatcttctgatgggggaccaaaagtcttc
aattatcagcattctttgagtggagtgacaccattgatggtgtttgctggaaaaggctgc
ataggtgacatttgcatgctcctctcttttggtgctgattgccatttacgtgctaatgat
gggaaaactgctctagattgggctgagcaggagaatcagacagaagctgctgaaataatt
aagaaacacgtggagaaatcatcttccagctgtgaggagcagcaacatttacttgacaaa
tacctatcaacagttgaccctgaactgattgatgatgtccttattgaacaattattaaga
aaaatatgcatagactcggaggacggggccatccttgttttccttcctggttgggaggac
attaacagaacaagagagagattgaaagcaagccactttttcaatgatcagtctaagttt
tcagtaatccctctccattctatggttccatctgtcgagcaaaagaaggtttttagacgc
cctcctccaggctgccgcaaaatcgttctttcaactaatattgctgaaactgccattacc
attgatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagttatgatcct
tataataatgtatcaactcttcaatcttcatgggtctcaaaagcaagtgcaaagcaaaga
gaagggcgtgctgggcggtgccagccagggatttgttatcatctttattcaaaacttcga
gcagcttcattgcctgatttccaggttcctgagattaagaggattcctattgaggaacta
tgtctgcaggtcaagctgcttaaccctgattgcaagatagaagaattcctgcagaagaca
cttgaccctcctgtttacgagaccatacgtaatgcaatcattgttcttcaagatattggg
gcgttatcatttgatgagaaacttacagagcttggagaaaggctaggatctttaccagtt
catccacttacaagcaaaatgcttttaattgccatcttattgaactgccttgacccagca
ttgactttggcttgcgcttctgactatagagatccatttaccctacccatgttgccaaat
gagaagaagagagctgcagctgcaaaagccgagttagcctcatggtatggtggaagaagt
gatcaattagcagttgtggctgcgtttgagggctggaaaagtgcgaaagaaattggtcaa
gaatcgaggttttgttctatgtactttgtatcatcaagcactatgcatatgctatcagga
atgcgtaaacaacttcaatctgaacttttgaggaatgggtttattccaggagatggatct
tcctgtaaccttaacacacaggatccaggcatactacatgctattcttcttgctggtttg
taccctatggttggaagactgctcccgccactgaaaggtggtaagagggctgtcatagag
actgcaggtggtgataaagttcgattaagccctcattctactaacttcaagctttcattc
caaaaattctatgatcaaccattaattgtatatgatgagataactcgtggtgatggaggt
ctgcatattaagaattgtagtgtcattgggccactcccactgttgttgctggcaacagag
attgtagtggctcctggaaatgaagatgatgatgatggcaatgatgatgatgaaagtgat
tacgaagatggtgatgaggacaatggcgaggaagataatattaaagcagatctgtcagaa
gcccatcaaggagagaaaattatgtcttctcctgataatatagttaaggtcgttgttgat
agatggattccttttgagtcaacagctcttgatgttgctcaaatttactgcctgagagag
agattaactgcagcaattttattcaaggtcacacatcctgggaaagttcttcctgaggtt
cttgcagcctctataaatgcaatggcttgcatcttgtcgtacaatgggatgtcaggaatc
tcattgccgctggagcctgtggactcgcttactacaatggttagtgctactgagattggt
cagtctgatcctgggtggaataacagactggatatgaatcccaacatttctcccaattca
tttgggtacaatgcccggcatcagcaccgcaatatgcatcatcaaagaggcagcattcat
atatcaaagggatcatttgcgcatggaggaaccatgcaaagaggtcattctaagcggaag
cgtggaaatggaccttattaa
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integrated database retrieval system
