Solanum dulcamara (climbing nightshade): 129892291
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Entry
129892291 CDS
T09577
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129892291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129892291
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129892291
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129892291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
129892291
NCBI-ProteinID:
XP_055823832
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All DBs
Position
6:427518..432527
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AA seq
709 aa
AA seq
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MKKLCMWKSLSTTRQLSHAPTTVFTTRRRALSSSSSFDIKNVTKSNFESALKDLRGLLRD
ADFVAVDLEMTGVTSAPWRESFDFDRYDISYLKVKDSAEKFAVVQFGVCPFRWDSHKQSF
IAHPHNFYIFPRQEIPGSNQSCEFLCQTTSLDFLAKYEFDFNLCVREGISYLSRSQEEEA
LERISSIYTEESSDSLFGLCEDADFPLVRMADVLFAERMKNTIREWRDSLLSKGSSSSEI
KQISTDPSQRFQMVFFKTRPGLALSGFTSRQLRVIKAVTKKNFKDLAYIRVAGEATSPQQ
LIVYTDSNDDRDLLMKEVKDSLRKEAETNVKSTVGFRHVIDLLSSERKLIVGHNCFLDVA
HIYSKFIGPLPSTAEDYVSSIQKIFPSIIDTKILLNANGVFRQTVNKSNTSLSRAFVSIC
PHIALGIKTSGLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGI
DFTLHVFAGDLAKETKLLNFINRLYLSWVSGNVVDLSTGKCTTDSSASSKLKSRYQEISF
PSIILLWGLPSKLKAREIRACIAQAFGPNSVLSVYHLDESAVFIQFSKPELVSKFLEMKE
TLRRNSDPISVLHPLSNILNGEHTHAATYDVYQQICSSSISKNLFADQAEAVGIKHKTVS
SRGDRVEKGNQVFDKETKVRMFDEKADDLMSSPYGSAESFYLDEVLASK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagctgtgtatgtggaaatctttatcaactacgcgccaattatcccacgctccg
accaccgttttcactacgcgccgccgcgcactctcttcatcttcttcgttcgatattaag
aatgttaccaaatcaaactttgaatcagctctcaaggacctacgaggtcttctacgggac
gccgatttcgtagctgtagatttggaaatgaccggagtcaccagcgcaccttggagagaa
tcattcgatttcgaccggtatgatattagctacctcaaagttaaggactccgccgagaag
ttcgccgtggttcagttcggtgtttgtcctttccggtgggactctcacaagcaatccttt
atcgctcatccacataacttctatatattcccacggcaagaaattcctggtagcaaccaa
tcctgtgagttcctttgccagacaacatcacttgatttcttggcaaaatacgagtttgat
ttcaatctgtgtgtacgtgaaggaatctcttatttatccagaagccaagaagaggaggca
ctggaacgtataagttcaatatacacagaagaatcatcagattccttgtttggcttgtgt
gaagatgcagacttccctttggtcaggatggctgatgttctatttgctgagagaatgaag
aacacaataagggaatggcgtgatagtttgttaagtaagggaagcagtagctctgaaatt
aaacaaatatcaactgatccaagtcagagatttcaaatggttttcttcaagacccgtcca
ggccttgcccttagtggttttacttctcgccaactaagggtgattaaagcggtcacgaaa
aagaatttcaaagatcttgcctatatccgagtagcaggtgaagcaacatctccacaacaa
ttgattgtctatacagattccaatgatgacagagatctactgatgaaagaggtgaaggac
agccttcgtaaagaagcagaaacaaatgtcaaatctactgttgggtttcgacatgttatt
gatcttctttcatcagagcgaaagttgattgtcggccacaattgctttcttgatgtggcg
catatatacagtaagttcattggtccactaccttcaacggctgaggattatgtatcttcc
attcagaagatctttccttccataattgacacgaagatactcttgaatgcaaacggtgtt
tttcgacagactgtaaataaaagcaacacctcactatccagagcgtttgtctctatttgt
cctcatattgctttaggtatcaaaacatctggtttggctgatagaccgtgtgtagaagtg
gaggttcaagtggatgaaaaaagatcttcaaactggaactcaggagccaagcatgaagct
ggctatgatgcattcatgactggatgcatttttgcacaggcgtgcaatcatctaggcatt
gatttcaccctccatgtttttgctggagatttagccaaggagacaaagcttctgaatttt
atcaatcgcctttaccttagctgggttagtggaaacgtcgttgatctaagtactgggaaa
tgtacaacagactcctcagcttctagtaaactcaaaagtcggtaccaggagatctcattt
cctagcatcattctgttgtggggattgccatctaaactgaaagcaagggagataagagct
tgtatagcacaagcctttggcccaaattctgttttgtctgtctaccatttggatgaaagc
gctgtctttattcagtttagcaagccagaactggtttctaagtttctagaaatgaaggaa
actctacgtaggaacagtgatccaatttccgtgttgcatcccctttcaaatattctgaac
ggggaacacactcatgcagctacgtacgatgtatatcaacaaatatgcagttcatccatc
tcaaagaatttattcgcagatcaggctgaagctgttggtatcaaacataaaacagtgtct
tctaggggagatcgagtggaaaagggaaaccaggtatttgacaaagaaaccaaagttagg
atgtttgatgagaaagcagatgatctgatgagttcaccatatggctcggcggaatctttt
tatctagatgaagttctggcaagcaaatag
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