Solanum dulcamara (climbing nightshade): 129892296
Help
Entry
129892296 CDS
T09577
Name
(RefSeq) protein PAT1 homolog 2-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129892296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129892296
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129892296
mRNA degradation factors
5'-3' decay
Decapping complex
129892296
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
129892296
NCBI-ProteinID:
XP_055823838
LinkDB
All DBs
Position
6:complement(15245968..15254323)
Genome browser
AA seq
812 aa
AA seq
DB search
MERSNSKYFTNLVNSSSSISDGELFDASQYAFFGGDVGEEIELGGLLEEDDNCIPSRNRN
CDDEVPEYHLFEKYEGSALGSLSDIDDLATTFSKLNRNVTGPRHPGVIGDRGSGSFSRES
SSAAEWSKEADFPDWFDQDFSDSESYQESKRWSSQPHPSAVHLAKSKPLYRTSSYPQRPQ
QLQHFLSEPILVPTSSFNSFPPPGGQSQQSSPCSHLHPQNLSSLAAGPKYPYFTANCSTL
SNSNMHLPGLPHGIHYGGNISQLNTTGLSLNNLLQNRWTSHAGLIHRDHSSLINSILPHH
FPHQNGLLSPQIMSPQQQQRLHLAVQPTLGHFSALQSQLFNSFPSPSHLSKYGSADYRNP
RSKSSHKGRHSVHSSKQATDNGNQKIQFRSKYMTGDEIQSIMKMQHSATHGNDPYVDDYY
HQARLSKKAADTRSTRRFCPNKEQASRPHNSTEMQPHLHVDAQGRVSFSSICRPCLLLEF
DPPGLVSSDGSGEQKVSEKPLEQEPTLAARITIEDGFYLLLEVDDIDRLLQFRQPQDGGA
QLRRKRQILLEGMAASLQLVDPLGKSGSSVGLTAKDDIVFLWLVSLPKGQKLISRYLCHL
IPGSELARIVCMAIFRHLRVLFGGLPTETEAVETITNLAKTVTGCISGMDLNSLGACLAA
IVCSSEQPPLRPLGSPAGDGASVILKTVLERATHLITDPQAGGNFSMPNPAFWQASFDAF
FGLLTKYCLSKHESIMQSILAQTPSNTEVVGPEAARAVSREMPVELLRASLPHTNEQQRK
LLFNFAQRSMPVAGVDAHGGCSGQTNLEPVSC
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccaattccaaatatttcaccaacttggttaactcatccagctctatatca
gacggtgagctatttgatgcatcacaatatgccttttttggtggagatgttggggaagaa
attgagttggggggtttattagaggaagatgataattgcattccttctcgaaatcgaaat
tgtgatgatgaggtaccggagtaccatttgtttgaaaaatatgagggatcagctttgggg
tctttatccgacatagatgatctggccaccacattttcgaagttgaacagaaatgtcact
ggaccaaggcatcctggagttattggcgaccgtggatcaggatctttttccagggaaagt
tcatcggcagctgaatggtcaaaggaggcagattttcctgattggtttgatcaggatttt
tctgacagtgaaagttaccaggaaagcaaaagatggtcttcacagccacatccctctgct
gtgcatcttgcaaagtcgaaaccattgtataggacatcctcataccctcagcgaccccaa
caacttcagcacttcttaagtgaacccattctagtaccaacgtcatcgttcaattctttt
cctcctccaggtggccaatctcaacaatcctcaccttgcagccatttgcatccgcaaaac
ttatcatctcttgctgctggacctaagtatccctatttcactgctaattgctctactttg
tcaaactctaatatgcatttgccaggcttgcctcatgggatccattatggtggaaacata
tcacagttgaacaccactggcctttcacttaataacctgctgcaaaatcgctggaccagc
catgcaggactcatacatagggaccattctagtctcataaacagtatcttaccacatcat
tttcctcatcaaaatgggttattatcccctcagataatgtccccccagcagcagcagaga
ttgcatcttgcagttcagccgactttaggtcatttttcagcacttcaatctcaattattt
aattcctttccttccccgtcccatctgagcaagtatggatcagcggattacagaaatcca
agatctaagtcatcacataaaggtagacacagtgtgcattcttctaaacaagctactgat
aatggtaaccagaaaatacagttcagatctaaatacatgactggtgatgaaatacagagc
attatgaaaatgcagcattctgcaacacatggaaatgatccttatgtggatgattattat
caccaagctcggttatcaaagaaagcagctgatacaagatcaacgcgtcggttctgtcca
aataaggagcaagcatcacggccacacaatagcacagagatgcagcctcatctccatgtt
gatgctcaggggcgggtttcattttcttccatctgtaggccttgtcttcttcttgaattt
gatccaccgggtcttgtttccagtgatggaagtggtgagcagaaggtatctgagaaacct
ttggaacaggagccgacacttgcagctagaattactattgaagatggtttctatcttctt
cttgaggttgatgacattgaccggctccttcagtttcgtcagccccaggatggtggtgct
cagctcaggcggaaacggcagatcctcttagaaggtatggcagcctcgcttcaacttgtt
gaccctcttggcaaaagtggcagttctgtagggcttactgctaaagatgacattgtattt
ttatggttggtatcacttcccaaaggccaaaagctcatctcaaggtatctttgtcatctt
attcctggaagtgagcttgccagaatagtttgcatggcaattttccgacacttaagagtc
ttgtttggtggtcttccaactgagacggaagcagtggagaccattactaatcttgcaaaa
acagtcactggatgcatcagtggcatggacctcaattcgctcggtgcttgtctagctgct
attgtttgttcgtcagaacagcctcctctccgcccacttggaagccctgctggagatgga
gcctctgttattctaaagactgttcttgaaagggcaactcatctgataacagatcctcag
gctggtggcaacttcagcatgcctaatcctgccttttggcaggcatcttttgatgccttc
tttggtttacttaccaagtattgtctgagtaagcatgaaagtattatgcaatcaatactt
gcgcagactccatcaaacactgaggtggttggtccagaggctgcaagagccgtaagtaga
gaaatgccagtggagcttctacgtgcaagtctgccacacacaaatgagcaacaaaggaag
ctgctgttcaattttgctcagcgatccatgcctgttgctggagttgatgctcatggtgga
tgtagtggacaaacaaatcttgaacccgtgagctgctag
DBGET
integrated database retrieval system
